Sundance Namespace Reference


Namespaces
namespace	Rivara
Classes
class	ADReal
	First-order automatic differentiation of a multivariable function. More...
class	ArrayOfTuples
	Class ArrayOfTuples packs an heterogeneous array of tuples into a single 1D array. More...
class	Pair
class	SortedPair
class	EnumTypeField
class	FixedArray
	A simple fixed-size array. More...
class	FunctorDomain
class	UnboundedDomain
class	PositiveDomain
class	StrictlyPositiveDomain
class	BoundedDomain
class	LowerBoundedDomain
class	NonzeroDomain
class	IntHashSet
class	IntVec
	An integer vector class for use in the generalized chain rule of Constantine and Savits (1996). More...
class	Map
	Extension of STL map, adding some nicer put/get/contains syntax and an iostream insertion operator. More...
class	MultiSet
	Extension of STL multiset, adding some nicer syntax and an iostream insertion operator. More...
class	NamedObject
	NamedObject provides an interface for getting and setting names of an object. More...
class	Noncopyable
	Noncopyable has a private copy ctor and assignment operator, which prevents any classes dervied from it from being copied. More...
class	ObjectWithInstanceID
	ObjectWithInstanceID provides a common method for the generation of instance-specific ID numbers. More...
class	VerbosityTraits
	Defines traits for getting default verbosity parameters from a class. More...
class	ObjectWithClassVerbosity
	ObjectWithClassVerbosity and the related verbosity() method provide a method for getting/setting verbosity flags for entire classes. More...
class	ParameterControlledObjectWithVerbosity
class	OrderedHandle
	Class OrderedHandle is an extension to Playa::Handle that includes a comparison operator ("<" operator) so that the handle can be used in ordered containers such as STL maps and sets. More...
class	OrderedPair
	OrderedPair provides a means of lexigraphic comparison of a pair of objects. More...
class	OrderedTriple
	Lexigraphically-comparable triple of objects. More...
class	OrderedQuartet
	Lexigraphically-comparable quartet of objects. More...
class	Point
	Point represents a spatial point. More...
class	Set
	Extension of STL set, adding some nicer syntax and an iostream insertion operator. More...
class	PowerFunctor
class	UnaryFunctor
class	VersionString
class	WatchFlag
	Class WatchFlag is used to mark individual expressions for possibly increased verbosity for diagnostic output. More...
class	BinaryEvaluator
class	CellDiameterExprEvaluator
class	CellVectorEvaluator
class	ChainRuleEvaluator
class	IndexPair
class	DerivProduct
class	ChainRuleSum
class	ConstantEvaluator
class	CoordExprEvaluator
class	CurveNormEvaluator
	Evaluator for the normal vector component (normal to one parameterized curve). More...
class	DerivOfSymbFuncEvaluator
class	DiffOpEvaluator
class	DiscreteFuncElementEvaluator
class	EFDEEvaluator
class	EvalManager
	EvalManager provides methods for interfacing to the framework through an AbstractEvalMediator and managing temporary variables through a TempStack. More...
class	Evaluator
	Base class for evaluator objects. More...
class	EvaluatorFactory
class	GenericEvaluatorFactory
class	NonlinearUnaryOpEvaluator
class	NullEvaluator
class	ProductEvaluator
class	StringEvalMediator
class	SubtypeEvaluator
class	SumEvaluator
class	SymbolicFuncElementEvaluator
class	TempStack
	TempStack provides a stack of temporary variables for use during evaluation. More...
class	UnaryEvaluator
class	UnaryMinusEvaluator
class	UserDefOpCommonEvaluator
	UserDefOpCommonEvaluator provides a single evaluation point for all components of a vector-valued functor. More...
class	UserDefOpEvaluator
class	AbstractEvalMediator
	Base class for evaluation mediator objects. More...
class	AlgebraSpecifier
	AlgebraSpecifier is used to indicate whether a given object represents a vector, scalar, component of a vector, etc. More...
class	CommonFuncDataStub
	CommonFuncDataStub is a placeholder for data to be shared between multiple components of a symbolic or discrete function. More...
class	Deriv
	The purpose of this class is to represent first-order spatial or functional differential operators. More...
class	DerivSet
	DerivSet is a set of multiple derivatives, sorted by increasing differentiation order. More...
class	DiscreteFuncDataStub
	DiscreteFuncDataStub is a placeholder for data to be shared between multiple components of a discrete function. More...
class	DiscreteFunctionStub
	DiscreteFunctionStub is the base class for discrete functions. More...
class	EquationSet
	Source: SundanceEquationSet.cpp. More...
class	EvalContext
	Different contexts might require the same expression to be evaluated to different orders of functional differentiation; for example, in setting up a linear system, second-order derivatives are required, but in evaluating a functional only zeroth derivs are required. More...
class	EvalContextStub
class	EvalVector
class	EvalVectorArray
class	FunctionIdentifier
	FunctionIdentifier provides a means for distinguishing between different functions and different vector components of the same function. More...
class	FunctionSupportResolver
class	LoadableVector
	LoadableVector is the interface through which a framework inserts values into a symbolic expression. More...
class	MultiIndex
	An integer vector representing a multivariate derivative. More...
class	MultipleDeriv
	Class MultipleDeriv is a multiple functional derivative operator represented as a multiset of first-order derivatives. More...
class	increasingOrder
class	increasingOrder< MultipleDeriv >
	Functor increasingOrder() is used as a comparison method for MultipleDeriv objects. More...
class	QuadratureFamilyStub
class	RegionQuadCombo
	Expressions may appear in more than one subregions of a problem, for instance in an internal domain and also on a boundary. More...
class	SpatialDerivSpecifier
	This class is a compact description of type of spatial derivative acting on an operative function: partial derivative, divergence, or normal derivative. More...
class	SymbolicFuncDescriptor
	This is a base class for functions or elements that need to report whether they're test or unknown functions. More...
class	TestFuncDataStub
	TestFuncDataStub is a placeholder for data to be shared between multiple components of a test function. More...
class	TestFunctionStub
	TestFunctionStub is the base class for unknown functions. More...
class	UnknownFuncDataStub
	UnknownFuncDataStub is a placeholder for data to be shared between multiple components of an unknown function. More...
class	UnknownFunctionStub
	UnknownFunctionStub is the base class for unknown functions. More...
class	BinaryExpr
	BinaryExpr is a base class for binary expressions, e.g., sums and products. More...
class	ConstantExpr
	ConstantExpr contains an immutable constant, to be distinguished from a parameter that is constant in space but can change during the course of a simulation. More...
class	CoordDeriv
	CoordDeriv represents a single first-order derivative with respect to a coordinate function. More...
class	DerivOfSymbFunc
	Specialization of DiffOp to the case where the argument is a symbolic function, allowing optimized evaluation. More...
class	DiffOp
class	DiscreteFuncElement
	DiscreteFuncElement represents a scalar-valued element of a (possibly) vector-valued discrete function. More...
class	EvaluatableExpr
class	ExplicitFunctionalDerivativeElement
	Scalar element of an explicit user-level functional derivative. More...
class	ExprBase
class	ExprWithChildren
	ExprWithChildren is a base class for any evaluatable expression that has child nodes, for example, sums and unary operators. More...
class	FuncElementBase
	FuncElementBase defines the interface for scalar-valued elements of Sundance functions. More...
class	FuncSetAccumulator
	This abstract class defines the interface for accumulating sets of functions that are available in an expression. More...
class	FunctionalPolynomial
	Specialized class for representing polynomials in symbolic functions and their derivatives. More...
class	FunctionWithID
	This is a base class for functions or elements that need an ID object. More...
class	ListExpr
class	NonlinearUnaryOp
class	ParameterData
	ParameterData is the specialization of DiscreteFuncDataStub to the case of a constant-valued discrete function. More...
class	ProductExpr
	ProductExpr represents a product of two scalar-valued expressions. More...
class	ScalarExpr
class	SparsitySuperset
class	SpatiallyConstantExpr
class	SumExpr
	SumExpr is the internal representation of an addition or subtraction node in the expression tree. More...
class	SumOfBCs
	SumOfBCs represents a sum of essential boundary conditions in integral form. More...
class	SumOfIntegrals
	SumOfIntegrals represents a sum of integrals, grouped by region and quadrature rule. More...
class	SymbolicFunc
	SymbolicFunc is a base class for functions such as test and unknown functions that are "variables" in a weak form. More...
class	SymbolicFuncElement
	SymbolicFuncElement represents a scalar-valued element of a (possibly) list-valued SymbolicFunction. More...
class	SymbPreprocessor
class	TestFuncElement
	TestFuncElement represents a scalar-valued element of a (possibly) list-valued TestFunction. More...
class	UnaryExpr
	UnaryExpr is a base class for operators that map a single scalar expr to another scalar expr. More...
class	UnaryMinus
class	UnknownFuncElement
	UnknownFuncElement represents a scalar-valued element of a (possibly) list-valued UnknownFunction. More...
class	UnknownParameterElement
	UnknownParameterElement represents an element of an unknown spatially-constant parameter. More...
class	UserDefFunctorElement
	Scalar-valued element of a vector-valued functor. More...
class	UserDefOpElement
	Scalar element of a vector-valued user-defined expression. More...
class	ZeroExpr
class	ProductTransformation
	ProductTransformation is a base class for any transformation which takes the two operands of a product (left, right) and produces a new expression mathematically equivalent to the original product. More...
class	ProductTransformationSequence
	ProductTransformationSequence is a sequence of transformations to be applied to a product, producing a transformed expression. More...
class	StdProductTransformations
	Apply a standard set of transformations. More...
class	RemoveZeroFromProduct
	Transform a product by removing a zero term: $x \times 0 \rightarrow 0.$ $0 \times x \rightarrow 0.$ . More...
class	RemoveOneFromProduct
	Transform a product by removing multiplication by 1.0: $x \times 1.0 \rightarrow x.$ $1.0 \times x \rightarrow x.$ . More...
class	RemoveMinusOneFromProduct
	Transform a product by removing multiplication by -1.0: $x \times (-1.0) \rightarrow -x.$ $-1.0 \times x \rightarrow -x.$ . More...
class	MultiplyConstants
	Multiply two constant exprs without transformation. More...
class	MoveConstantsToLeftOfProduct
	Transform a product by moving any constants to the left: $x \times a \rightarrow a \times x$ . More...
class	MoveUnaryMinusOutsideProduct
	Transform a product by any unary minus operations outside the product $(-x) \times y \rightarrow -(x \times y)$ $x \times (-y) \rightarrow -(x \times y)$ $)-x) \times (-y) \rightarrow x \times y$ . More...
class	AssociateHungryDiffOpWithOperand
	Transform a product by associating any hungry diff op in the left operand with the right operand: $(u D_x) v \rightarrow u D_x u$ . More...
class	KillDiffOpOnConstant
	Kill a diff op acting on a constant $D_x \alpha \rightarrow 0$ $D_x (\alpha + u) \rightarrow D_x u$ . More...
class	BringConstantOutsideDiffOp
	Bring a constant outside a diff op $D_x (\alpha u) \rightarrow \alpha D_x u$ . More...
class	DistributeSumOfDiffOps
	Distribute a sum of diff ops over their operand $(D_1 + D_2) u \rightarrow D_1 u + D_2 u$ . More...
class	ApplySimpleDiffOp
	Apply a simple diff op. More...
class	RearrangeRightProductWithConstant
	Rearrange a product whose right operand is a product including a constant such that constants are grouped on the left: $\alpha (\beta u) \rightarrow (\alpha\beta) u$ $u (\alpha v) \rightarrow \alpha (u v)$ . More...
class	RearrangeLeftProductWithConstant
	Rearrange a product whose left operand is a product including a constant such that constants are grouped on the left: $(\alpha u)\beta \rightarrow \alpha\beta u$ $(\alpha u)v \rightarrow \alpha (u v)$ . More...
class	TakeConstantUnderIntegralSign
	Rearrange a product of a constant and an integral so that the constant is under the integral sign: $\alpha \int u \rightarrow \int \alpha u$ . More...
class	StdSumTransformations
	Apply a standard set of transformations. More...
class	IdentifyPolynomialSum
	Rewrite a sum as a polynomial object, if possible. More...
class	ReorderSum
	Put terms in a standard order. More...
class	RemoveUnaryMinusFromSum
	Simplify sums involving unary minuses $x + (-y) \rightarrow x-y.$ $(-x) + (-y) \rightarrow -(x+y).$ $(-x) + y \rightarrow y-x.$ . More...
class	RemoveZeroFromSum
	Transform a sum by removing a zero term: $x + 0 \rightarrow x.$ . More...
class	SumConstants
	Sum two constant exprs without transformation. More...
class	MoveConstantsToLeftOfSum
	Transform a sum by moving any constants to the left: $x + a \rightarrow a + x$ . More...
class	RearrangeRightSumWithConstant
	Rearrange a sum whose right operand is a sum including a constant such that constants are grouped on the left: $\alpha + s_1 (\beta + s_2 u) \rightarrow (\alpha + s_1 \beta) + s_1 s_2 u$ $u + s_1 (\alpha + s_2 v) \rightarrow s_1 \alpha + (u + s_1 s_2 v)$ . More...
class	RearrangeLeftSumWithConstant
	Rearrange a sum whose left operand is a sum including a constant such that constants are grouped on the left: $(\alpha + s_1 u) + s_2 \beta \rightarrow (\alpha + s_2 \beta) + s_1 u$ $(\alpha + s_1 u) + s_2 v \rightarrow \alpha + (s_1 u + s_2 v)$ . More...
class	SumIntegrals
	Transform sum of integrals to SumOfIntegral objects. More...
class	SumTransformation
	SumTransformation is a base class for any transformation which takes the two operands of a sum (left, right) and produces a new expression mathematically equivalent to the original sum. More...
class	SumTransformationSequence
	SumTransformationSequence is a sequence of transformations to be applied to a sum, producing a transformed expression. More...
class	SymbolicTransformation
	SumTransformation is a base class for any transformation which takes the two operands of a sum (left, right) and produces a new expression mathematically equivalent to the original sum. More...
class	CellDiameterExpr
	Expression that returns a characteristic size for each cell on which it is evaluated. More...
class	CellVectorExpr
	Expression that returns a component of a cell-determined vector for each cell on which it is evaluated. More...
class	ComplexExpr
	Complex expression. More...
class	CoordExpr
	CoordExpr is an expression that returns one of the cartesian coordinates for each point at which it evaluated. More...
class	CurveExpr
	class which serves as expression for interface (curve or surface) values More...
class	CurveNormExpr
	CurveNormExpr is an expression that returns the Cartesian coordinate component of the normal vector. More...
class	Derivative
	Derivative is an expression subtype representing a first-order spatial partial derivative operator. More...
class	Expr
	User-level expression class. More...
class	FunctionalEvaluatorBase
	Abstract interface for the FunctionalEvaluator class it contains only empty functions. More...
class	Parameter
	A Parameter is an expression subtype used to represent a spatially-constant parameter that may change during the course of a simulation, for example, the time in a transient simulation or a continuation parameter when using a homotopy method. More...
class	PointwiseUserDefFunctor0
	PointwiseUserDefFunctor0 is an implementation of UserDefFunctor for which the user writes code to evaluate the function at a single quadrature point. More...
class	PointwiseUserDefFunctor1
	PointwiseUserDefFunctor1 is an implementation of UserDefFunctor for which the user writes code to evaluate the function at a single quadrature point. More...
class	PointwiseUserDefFunctor2
	PointwiseUserDefFunctor2 is an implementation of UserDefFunctor for which the user writes code to evaluate the function at a single quadrature point. More...
class	UnknownParameter
class	UserDefFunctor
	UserDefFunctor defines an interface for callbacks used to implement user-defined nonlinear operators in the Sundance Expr system. More...
class	UserDefOp
	UserDefOp provides a hook for inserting a user-defined nonlinear function into the Sundance Expr system. More...
class	BinaryCellFilter
	BinaryCellFilter implements cell filters that do binary logical operations on cell sets. More...
class	BoundaryCellFilter
	BoundaryCellFilter identifies all cells of dimension on the boundary. More...
class	BoundaryCellPredicate
	BoundaryCellPredicate tests whether a cell is on the boundary of the domain. More...
class	CellCurvePredicate
class	CellFilter
	CellFilter is a user-level object representing a filter that selects from a mesh all cells that satisfy some condition. More...
class	CellFilterBase
	Base class for CellFilter objects. More...
class	CellIterator
	CellIterator is an iterator for walking through cell sets. More...
class	CellPredicate
	User-level handle for predicates (deriving from CellPredicateBase) used to decide whether a given cell passes a CellFilter. More...
class	CellPredicateBase
	CellPredicateBase is the base class for predicate objects that test cells against some condition. More...
class	CellSet
	CellSet is, you guessed it, a set of cells in a mesh. More...
class	CellSetBase
	CellSetBase is the base class for cell sets. More...
class	CFMeshPair
class	DimensionalCellFilter
	DimensionalCellFilter is a filter that identifies all cells of a specified dimension. More...
class	MeshDomainBase
	Base class for mesh refinement , but also to define computational domain (which must not be the same as the mesh domain). More...
class	CurveDomain
	Class defines mesh domain based on parametrized curve. More...
class	MeshDomainDef
class	ExplicitCellIterator
class	ExplicitCellSet
	ExplicitCellSet is a cell set subtype where the cell LIDs are stored explicitly in an STL set. More...
class	GIDCellPredicate
	GIDCellPredicate tests whether a cell's GID is contained in a specified set of GIDs. More...
class	ImplicitCellSet
	ImplicitCellSet is a cell set subtype where the set of cell LIDs is never stored. More...
class	LabelCellPredicate
	LabelCellPredicate tests whether a cell's label is equal to a reference label. More...
class	LabeledSubsetCellFilter
class	MaximalCellFilter
	MaximalCellFilter is a filter that identifies all mesh cells of maximal dimension. More...
class	MaximalCellSet
class	NullCellFilter
	NullCellFilter is used as a placeholder cell filter in those equations defined independently of geometry, i.e., equations involving only global parameters. More...
class	CellPredicateFunctorBase
class	PositionalCellPredicate
	PositionalCellPredicate tests whether the cell's nodes satisfy a condition on their positions. More...
class	PointCellPredicateFunctor
class	CoordinateValueCellPredicateFunctor
class	PointCellPredicate
class	CoordinateValueCellPredicate
class	SideCellFilter
class	SubsetCellFilter
class	SubsetManager
	SubsetManager keeps maps from cell filters to their subsets. More...
class	BasicSimplicialMesh
	A no-frills parallel simplicial mesh. More...
class	BasicSimplicialMeshType
	BasicSimplicialMeshType is used to create BasicSimplicialMesh objects. More...
class	VertexView
	VertexView is a read-only "view" of a cell's vertices, where the vertices are stored contiguously in a large master array. More...
class	HNMesh2D
	Class for 2D hierarchical structured quad Mesh The main internal idea of the mesh ist that there are different numberings of the elements ID -> each element has an ID (also those which are completely outside the mesh domain, and those which are not leaf) In the code sometimes internaly LID is used instead of ID due to legacy !! :-P GID -> all leaf elements which are visible to Sundance (only the leaf elements should be visible) LID -> all the elements which have GID and belong and either belong to the local processor or are in the ghost cells . More...
class	HNMesh3D
	Class for 3D hierarchical structured quad Mesh The main internal idea of the mesh ist that there are different numberings of the elements ID -> each element has an ID (also those which are completely outside the mesh domain, and those which are not leaf) In the code sometimes internaly LID is used instead of ID due to legacy !! :-P GID -> all leaf elements which are visible to Sundance (only the leaf elements should be visible) LID -> all the elements which have GID and belong and either belong to the local processor or are in the ghost cells . More...
class	HNMeshType2D
	Class for a simple capable to refine, and to work in parallel structured 2D mesh type Mesh is based on the trisection refinement. More...
class	HNMeshType3D
	Class for a simple capable to refine, and to work in parallel structured 3D mesh type Mesh is based on the trisection refinement. More...
class	PeanoMeshType2D
	PeanoMeshType is used to create PeanoMesh objects. More...
class	PeanoMeshType3D
	PeanoMeshType is used to create PeanoMesh objects. More...
class	PeriodicMesh1D
	Periodic mesh in 1D. More...
class	PeriodicMeshType1D
class	PeriodicSingleCellMesh1D
	Periodic one-element mesh in 1D. More...
class	CellJacobianBatch
	A CellJacobianBatch is a collection of Jacobian matrices for many quadrature points distributed over batch of cells. More...
class	CellReorderer
	User-level handle class for abstract specification of cell reordering algorithms. More...
class	CellReordererFactoryBase
	Factory class to instantiate cell reorderers for specific meshes. More...
class	GenericCellReordererFactory
	Factory class to instantiate cell reorderers for specific meshes. More...
class	CellReordererImplemBase
	Abstract interface for the low-level objects that implement cell reordering. More...
class	IdentityReordererImplem
	The identity reorderer walks through cells in whatever order they are numbered the the mesh. More...
class	IdentityReorderer
class	IncrementallyCreatableMesh
	IncrementallyCreatableMesh is an interface for the creation of meshes by adding vertices, then elements. More...
class	MaximalCofacetBatch
	MaximalCofacetBatch is used to store the maximal cofacets of a batch of cells of codimension one. More...
class	Mesh
	Mesh is the user-level object representing discrete geometry. More...
class	MeshBase
	Abstract interface to a mesh. More...
class	MeshType
	Class MeshType is a user-level object for specification of which internal mesh representation is to be used when building or reading a mesh. More...
class	MeshTypeBase
	MeshTypeBase is a factory class for empty meshes, allowing generic mesh sources to build a mesh of user-specified type. More...
class	BamgMeshReader
	BamgMeshReader reads a mesh stored in Frederic Hecht's g format. More...
class	ExodusMeshReader
	ExodusMeshReader reads a mesh from an ExodusII file. More...
class	ExodusNetCDFMeshReader
	ExodusNetCDFMeshReader reads a mesh from a NetCDF dump of an Exodus file. More...
class	HNMesher2D
class	HNMesher3D
class	MeshBuilder
class	MeshReaderBase
	MeshReaderBase is a base class for mesh sources that get a mesh from a file. More...
class	MeshSource
	MeshSource is the user-level interface for objects such as mesh generators and mesh file readers. More...
class	MeshSourceBase
	MeshSourceBase provides the internal interface for mesh sources, i.e., objects such as mesh generators and file readers that can produce a mesh object. More...
class	OneTriangleMesher
	Create a mesh having one triangle. More...
class	OneTetMesher
	Create a mesh having one tet. More...
class	PartitionedLineMesher
	PartitionedLineMesher meshes the one-dimensional interval $\left[a_x, b_x\right]$ with elements per processor. More...
class	PartitionedRectangleMesher
	PartitionedRectangleMesher meshes the rectangle $\left[a_x, b_x\right] \otimes \left[a_y, b_y\right]$ with $n_x \otimes n_y$ elements per processor. More...
class	PeanoMesher2D
class	PeanoMesher3D
class	PeriodicLineMesher
	Create a mesh having one triangle. More...
class	TriangleMeshReader
	TriangleMeshReader reads a mesh stored in Shewchuk's Triangle format. More...
class	ExtrusionMeshTransformation
	ExtrusionMeshTransformation extrudes a 2D mesh to 3D. More...
class	FileIOChacoPartitioner
	This partitioner makes a system call to run Chaco, passing partitioning information to it through file IO. More...
class	MeshTransformation
	MeshTransformation is the user-level interface for mesh filters, i.e., objects that take an input mesh and produce a new mesh. More...
class	MeshTransformationBase
	MeshSourceBase provides the internal interface for mesh filters, i.e., objects that take an input mesh and produce a new mesh. More...
class	SerialPartitionerBase
	Base class for mesh partitioners that run in serial. More...
class	CellLIDMappedFieldWrapper
class	DSVWriter
	DSVWriter writes a 1D mesh to delimiter-separated file. More...
class	DSVWriterFactory
	DSVWriterFactory produces a DSV writer in contexts where a user cannot do so directly. More...
class	ExodusWriter
	ExodusWriter writes a mesh or fields to an ExodusII file. More...
class	ExodusWriterFactory
	ExodusWriterFactory produces an Exodus writer in contexts where a user cannot do so directly. More...
class	FieldBase
class	FieldWriter
	FieldWriter is the user level object for writing fields and meshes to output stream. More...
class	FieldWriterBase
	FieldWriterBase is a base class for objects that write fields and/or meshes to a stream. More...
class	FieldWriterFactoryBase
	FieldWriterFactoryBase. More...
class	FieldWriterFactory
	In some contexts the user can't construct a writer directly; for example, during timestepping the writer might be constructed by the step controller. More...
class	MatlabWriter
	MatlabWriter writes a 1D mesh to a space-delimited file. More...
class	MatlabWriterFactory
	MatlabWriterFactory produces a Matlab writer in contexts where a user cannot do so directly. More...
class	TriangleWriter
	TriangleWriter writes a mesh or fields to a file in Shewchuk's Triangle format. More...
class	TriangleWriterFactory
	TriangleWriterFactory produces an Triangle writer in contexts where a user cannot do so directly. More...
class	VerboseFieldWriter
	VerboseFieldWriter dumps every imaginable bit of information about a mesh. More...
class	VTKWriter
	VTKWriter writes a mesh or fields to a VTK file. More...
class	VTKWriterFactory
	Create a VTKWriter. More...
class	Assembler
class	AssemblyKernelBase
	AssemblyKernelBase abstracts the operations that must be done in an assembly loop. More...
class	CurveEvalMediator
class	CurveIntegralCalc
	Class to compute the intersection/quadrature points of a cell with a curve in 2/3D. More...
class	CurveQuadratureIntegral
	Integration by quadrature over a maximal cell. More...
class	ElementIntegral
	ElementIntegral encapsulates the common data needed for the integration of groups of related zero-forms, one-forms, and two-forms. More...
class	FunctionalAssemblyKernel
	FunctionalAssemblyKernel does assembly of a functional value. More...
class	FunctionalEvaluator
class	FunctionalGradientAssemblyKernel
	FunctionalGradientAssemblyKernel does assembly of a functional and its gradient. More...
class	GrouperBase
	Grouper. More...
class	IntegralGroup
	IntegralGroup collects together several integrals having common properties that can be used either to eliminate redundant computations or to share storage an eliminate repeated allocations. More...
class	LocalDOFMap
	LocalDOFMap bundles several compact tables used for fast lookup of local DOFs. More...
class	LocalMatrixContainer
	LocalMatrixContainer is a container for local matrix and vector values. More...
class	MapBundle
	MapBundle collects several data structures needed for DOF mapping. More...
class	MatrixVectorAssemblyKernel
	MatrixVectorAssemblyKernel does assembly of a matrix and vector. More...
class	MaximalQuadratureIntegral
	Integration by quadrature over a maximal cell. More...
class	QuadratureEvalMediator
class	QuadratureIntegral
class	QuadratureIntegralBase
class	RefIntegral
	RefIntegral represents the integrals of a product of basis functions (or their derivatives) over a reference cell. More...
class	StdFwkEvalMediator
	StdFwkEvalMediator evaluates mesh-dependent functions in the standard framework. More...
class	SundanceSurf3DCalc
	This class contains the computational methods which are necessary for the 3D surface and cut-cell calculations. More...
class	TrivialGrouper
	Grouper. More...
class	VectorAssemblyKernel
	VectorAssemblyKernel builds load vectors. More...
class	VectorFillingAssemblyKernel
	VectorFillingAssemblyKernel provides a common implementation of multivector-filling capabilities needed by matrix-vector assembly, multivector assembly, and functional gradient evaluation. More...
class	Block
class	BlockArray
class	DOFMapBase
	Base interface for implementations of a degree of freedom map. More...
class	DOFMapBuilder
class	HNDoFMapBase
	The abstract class which extends the functionalities of the DOF map The only additional functionality is that we have a restriction on the DOFs , with the pre-fill transformations these constraints can be build in into the matrix. More...
class	HNDoFMapBaseHomogeneous
	The abstract class which extends the functionalities of the DOF map The only additional functionality is that we have a restriction on the DOFs , with the pre-fill transformations these constraints can be build in into the matrix. More...
class	HomogeneousDOFMap
	A HomogeneousDOFMap is a DOF map for the special (and common) case in which every function has the same basis and is defined on every cell in the mesh. More...
class	InhomogeneousDOFMapHN
	A MixedDOFMapHN is a DOF map for the case where every function is defined on every cell in the mesh, but where functions may have different bases. More...
class	InhomogeneousEdgeLocalizedDOFMap
class	InhomogeneousNodalDOFMap
class	MapStructure
class	MixedDOFMap
	A MixedDOFMap is a DOF map for the case where every function is defined on every cell in the mesh, but where functions may have different bases. More...
class	MixedDOFMapHN
	A MixedDOFMapHN is a DOF map for the case where every function is defined on every cell in the mesh, but where functions may have different bases. More...
class	NodalDOFMap
class	NodalDOFMapHN
class	PartialElementDOFMap
	PartialElementDOFMap is a DOF map specialized to the case of element-based DOFs on a subset of cells in the domain. More...
class	SpatiallyHomogeneousDOFMapBase
class	SundanceGlobal
	Class Sundance provides several static methods for managing the environment of a simulation. More...
class	AToCDensitySampler
	AToCDensitySampler samples a distribution of particles to compute a density function on a discrete space. More...
class	AToCPointLocator
	AToCPointLocator finds the cell index for a point within an unstructured mesh. More...
class	CoordinateSystemBase
class	CoordinateSystem
class	CartesianCoordinateSystem
class	MeridionalCylindricalCoordinateSystem
class	RadialSphericalCoordinateSystem
class	CoordinateSystemBuilder
class	CToAInterpolator
	CToAInterpolator interpolates a discrete function at particle positions. More...
class	StepControlParameters
class	OutputControlParameters
class	DoublingStepController
class	Eigensolution
class	EventDetectorBase
class	ThresholdEventDetector
class	ExprComparisonBase
	Base class for callback that computes distance between discrete functions. More...
class	DefaultExprComparison
	Default comparison computes Euclidean distance between vectors. More...
class	ExprFieldWrapper
class	Functional
class	L2Projector
	L2Projector projects an expression onto a DiscreteSpace. More...
class	LinearEigenproblem
class	LinearProblem
	LinearProblem encapsulates all information needed to form a discrete linear problem. More...
class	LinearSolveDriver
class	NLOp
	NLOp encapsulates a discrete nonlinear problem, and can be passed to a nonlinear solver such as NOX. More...
class	NonlinearProblem
	NonlinearProblem encapsulates a discrete nonlinear problem. More...
class	LineDomain
	This class bundles together a sequence of uniform meshes of the 1D interval [a,b] with cell filters defining the interior and boundaries. More...
class	RectangleDomain
	This class bundles together a sequence of uniform meshes of the 2D rectangle [ax,bx] times [ay,by] with cell filters defining the interior and boundaries. More...
class	LPTestSpec
class	ErrNormCalculatorBase
	Base class for objects that compute error norms. More...
class	L2NormCalculator
	Object to compute L2 norms of errors. More...
class	ForwardProblemTestBase
class	LPTestBase
class	LP1DTestBase
class	LPRectTestBase
class	LPTestSuite
class	RefinementTransformation
class	StochBlockJacobiSolver
class	TransientStepProblem
class	UniformRefinementPair
class	BasisDOFTopologyBase
	Abstract interface for specification of the topology of degree-of-freedom (DOF) assignments on reference cells in any dimension. More...
class	BasisFamily
	BasisFamily is the user-level handle class for specifying the basis with which a test, unknown, or discrete function is represented. More...
class	BasisArray
class	BasisFamilyBase
class	ScalarBasis
	Base class for scalar-valued basis families. More...
class	VectorBasis
class	HDivVectorBasis
	Base class for bases living in H(div). More...
class	HCurlVectorBasis
	Base class for bases living in H(curl). More...
class	BasisReferenceEvaluationBase
	Abstract interface for evaluation of basis functions and their spatial derivatives on reference cells. More...
class	Bernstein
	Bernstein basis. More...
class	BrickQuadrature
	Get abscissas and weights for Gaussian quadrature on Brick cells (cuboids). More...
class	Bubble
	Bubble function for use in error estimation. More...
class	ClosedNewtonCotes
	Closed Newton-Cotes quadrature rules for lines and triangles. More...
class	ClosedNewtonCotesType
	Generates closed Newton-Cotes quadrature rules. More...
class	CubicHermite
	CubicHermite basis. More...
class	DiscreteFunction
	DiscreteFunction represents a function that is discretized on a finite-element space. More...
class	DiscreteFunctionData
	DiscreteFunctionData. More...
class	DiscreteSpace
	DiscreteSpace represents a discrete finite-element space (i.e., a mesh and a basis). More...
class	EdgeLocalizedBasis
	EdgeLocalizedBasis is a basis function defined only on edges. More...
class	FeketeBrickQuadrature
	Get abscissas and weights for Gauss-Lobatto quadrature on brick cells (cuboids) (Gauss-Lobatto points are Fekete points on tensor elements). More...
class	FeketeQuadQuadrature
	Get abscissas and weights for Gauss-Lobatto quadrature on quadrilateral (Gauss-Lobatto points are Fekete points on tensor elements). More...
class	FeketeQuadrature
	Family of Fekete approach integration rules, suitable for integration over arbitrary regions (For tensor elements the Gauss-Lobatto points are Fekete points). More...
class	FeketeQuadratureType
	Family of Fekete approach integration rules, suitable for integration over arbitrary regions (For tensor elements the Gauss-Lobatto points are Fekete points). More...
class	FeketeTriangleQuadrature
	Get abscissas and weights for Fekete point quadrature on triangles. More...
class	Fourier
	Fourier basis. More...
class	FuncWithBasis
class	Gauss1D
	Get abscissas and weights for Gauss-Legendre quadrature on a line segement. More...
class	GaussianQuadrature
	Family of optimal Gaussian integration rules, e.g., Gauss-Legendre on lines, Dunavant on triangles. More...
class	GaussianQuadratureType
	Family of optimal Gaussian integration rules, e.g., Gauss-Legendre on lines, Dunavant on triangles. More...
class	GaussLobatto1D
	Get abscissas and weights for Gauss-Lobatto-Legendre quadrature on a line segment. More...
class	GaussLobattoQuadrature
class	Lagrange
	Lagrange basis. More...
class	Legendre
	Legendre basis. More...
class	Nedelec
	Lowest-order Nedelec basis. More...
class	PolygonQuadrature
	Quadrature special for the polygon curve integration . More...
class	QuadQuadrature
	Get abscissas and weights for Gaussian quadrature on quadrilateral. More...
class	QuadratureFamily
	QuadratureFamily is a geometry-independent specification of a method by which quadrature is to be carried out. More...
class	QuadratureFamilyBase
	QuadratureFamilyBase extends QuadratureFamilyStub to provide an interface for getting quadrature points for a given cell type. More...
class	QuadratureType
	QuadratureFamily is a geometry-independent specification of a method by which quadrature is to be carried out. More...
class	QuadratureTypeBase
	QuadratureTypeBase. More...
class	RaviartThomas
	Lowest-order Raviart-Thomas basis. More...
class	SurfQuadrature
	The surface integral class. More...
class	TensorBasisBase
class	TestFunction
	TestFunction represents a test function in a finite element problem. More...
class	TestFunctionData
	TestFunctionData contains the specification of a test function's basis. More...
class	TetQuadrature
	Get abscissas and weights for Gaussian quadrature on tetrahedra. More...
class	TrapesoidQuadrature
class	TriangleQuadrature
	Get abscissas and weights for Gaussian quadrature on triangles. More...
class	UnknownFunction
	UnknownFunction represents an unknown function in a finite element problem. More...
class	UnknownFunctionData
	UnknownFunctionData contains the specification of an unknown function's basis. More...
class	VectorBasisComponent
	This class is for the representation of a single component of a vector-valued basis family. More...
class	IterCallbackBase
	IterCallbackBase provides an abstract interface for callbacks to be performed at the start of each optimization iteration. More...
class	DefaultIterCallback
	Default callback writes all variables to disk at a specified frequency. More...
class	LinearPDEConstrainedObj
	LinearPDEConstrainedObj is a base class for objective functions of the reduced-space variable where the constraint is a linear PDE in the state variables. More...
class	NonlinearPDEConstrainedObj
	NonlinearPDEConstrainedObj is a base class for objective functions of the reduced-space variable where the constraint is a nonlinear PDE in the state variables. More...
class	PDEConstrainedObjBase
	PDEConstrainedObj is a base class for objective functions of the reduced-space variable where the constraint is a PDE in the state variables. More...
class	PointData
	PointData is a utility class that helps create the Sundance objects required to include point measurements in an inversion problem. More...
class	SloppyPointComparitor
	Do lexigraphic comparison on points, including a bit of sloppiness. More...
class	PointDataExprFunctor
	This is a functor that allows the sensor readings to be obtained through a Sundance user-defined expression. More...
class	PointDataCellPredicateFunctor
	This is a functor that allows a positional cell predicate to test against the locations of the sensors. More...
Typedefs
typedef OrderedPair < MultipleDeriv, MultipleDeriv >	DerivPair
typedef Sundance::Map < DerivPair, int >	ProductRulePerms
typedef OrderedTriple < OrderedHandle < CellFilterStub > , OrderedHandle < QuadratureFamilyStub > , WatchFlag >	RegTriple
typedef std::set< int >	ColSetType
Enumerations
enum	AlgebraType { VectorAT, NormalAT, CoordCompAT, ScalarAT }
enum	ComputationType { MatrixAndVector, VectorOnly, FunctionalOnly, FunctionalAndGradient, Sensitivities }
enum	DerivType { CoordDT, FunctionalDT, NullDT }
enum	SpatialDerivType { IdentitySDT, PartialSDT, NormalSDT, DivSDT }
enum	DerivSubsetSpecifier { AllNonzeros, RequiredNonzeros, VariableNonzeros, ConstantNonzeros }
enum	DerivState { ZeroDeriv, ConstantDeriv, VectorDeriv }
	DerivState can be used to classify the known state of each functional derivative at any node in the expression tree. More...
enum	CellVectorExprType { CellNormalVector, CellTangentSpace }
enum	CellType { NullCell, PointCell, LineCell, TriangleCell, TetCell, QuadCell, BrickCell, PrismCell }
	Enumeration of specific 1D, 2D, and 3D cell types. More...
enum	MeshEntityOrder { UFCMeshOrder, ExodusMeshOrder }
	Identifier for ordering convention. More...
enum	IntegrationCellSpecifier { NoTermsNeedCofacets, AllTermsNeedCofacets, SomeTermsNeedCofacets }
enum	ThresholdEventType { AnyAbove, AllAbove, AnyBelow, AllBelow }
Functions
ADReal	operator+ (const double &scalar, const ADReal &a)
ADReal	operator- (const double &scalar, const ADReal &a)
ADReal	operator* (const double &scalar, const ADReal &a)
ADReal	operator/ (const double &scalar, const ADReal &a)
ADReal	pow (const ADReal &x, const double &y)
	SUNDANCE_AD_FUNCTOR (exp, StdExp) SUNDANCE_AD_FUNCTOR(log
StdLog	SUNDANCE_AD_FUNCTOR (sqrt, StdSqrt) SUNDANCE_AD_FUNCTOR(sin
void	reportFailure (const MPIComm &comm)
	Call this function upon catching an exception at a point before a collective operation.
bool	checkForFailures (const MPIComm &comm)
	Call this function after exception-free completion of a try/catch block preceding a collective operation.
Array< Array< int > >	partitionInteger (int n)
	Return partitions of an integer.
bool	nextNum (Array< int > &digits, const Array< int > &radix)
	Get the next mixed-radix number.
void	weightedPartitions (int n, const Array< int > &w, Array< Array< int > > &parts)
	Get the weighted partitions of an integer.
void	weightedOrderedPartitions (const IntVec &v, const Array< int > &w, Array< Array< IntVec > > &parts)
void	pSet (const IntVec &lambda, const IntVec &nu, int s, Array< Array< IntVec > > &K, Array< Array< IntVec > > &L)
Array< Array< Array< int > > >	compositions (int n)
	Return compositions of an integer.
void	restrictedCompositions (int n, int M, Array< Array< int > > &rComps)
	Get the compositions of length M of an integer n.
Array< Array< int > >	nonNegCompositions (int n, int J)
	Return the non-negative compositions of an integer into J terms.
Set< Pair< MultiSet< int > > >	loadPartitions (int x, int n, const MultiSet< int > &left, const MultiSet< int > &right)
	Form all pairs of multisets that can be generated from an initial pair by adding n copies of entry x.
Set< Pair< MultiSet< int > > >	binaryPartition (const MultiSet< int > &m)
	Return the size-2 partitions of a multiset.
Set< MultiSet< MultiSet< int > > >	multisetPartitions (const MultiSet< int > &m)
	Return the partitions of a multiset.
Map< int, int >	countMap (const MultiSet< int > &m)
	Given a multiset, create a mapping from entry to number of repetitions in the multisets.
Array< Array< int > >	indexCombinations (const Array< int > &s)
	For a given integer vector of length N, find all combinations of integers (i_1, 1_2, .
Array< Array< Array< int > > >	binnings (const MultiSet< int > &mu, int n)
Array< Array< Array< int > > >	indexArrangements (const MultiSet< int > &mu, const Array< int > &k)
Set< MultiSet< int > >	multisetSubsets (const MultiSet< int > &x)
	Return all subsets of a multiset.
Array< Array< MultiSet< int > > >	multisetCompositions (int s, const MultiSet< int > &x)
	Return the s-term compositions of a multiset.
Array< Array< int > >	distinctIndexTuples (int m, int n)
	Generate the (n-choose-m) distinct index combinations for choosing m entries from an array of n elements.
Array< int >	bitsOfAnInteger (int x, int n)
	Compute the n bits of an integer x < 2^n.
int	pow2 (int n)
	Compute the n-th power of 2.
Array< Array< MultiSet< int > > >	multisetSubsetNTuples (int n, const MultiSet< int > &x)
	Return all N-tuples of subsets of a multisets such that the union of tuple entries is a subset of the original multiset.
template<class T >
std::ostream &	operator<< (std::ostream &os, const Pair< T > &p)
template<class T >
std::ostream &	operator<< (std::ostream &os, const SortedPair< T > &p)
template<class T >
Array< Array< Array< T > > >	indexArrangements (const MultiSet< T > &mu, const Array< int > &k)
template<class T >
Array< Array< Array< T > > >	binnings (const MultiSet< T > &mu, int n)
	Return the distinct arrangements of the given multiset into n bins.
int	factorial (const MultiSet< int > &ms)
template<class T >
FixedArray< 2, T >	makeFA (const T &a, const T &b)
	FixedArray
template<class T >
FixedArray< 3, T >	makeFA (const T &a, const T &b, const T &c)
	FixedArray
template<class T >
FixedArray< 4, T >	makeFA (const T &a, const T &b, const T &c, const T &d)
	FixedArray
std::ostream &	operator<< (std::ostream &os, const FunctorDomain &f)
IntVec	intVec (int a)
IntVec	intVec (int a, int b)
IntVec	intVec (int a, int b, int c)
IntVec	intVec (int a, int b, int c, int d)
IntVec	intVec (int a, int b, int c, int d, int e)
template<class A , class B >
std::ostream &	operator<< (std::ostream &os, const OrderedPair< A, B > &p)
void	writeTable (std::ostream &os, const Tabs &tab, const Array< double > &a, int cols)
void	writeTable (std::ostream &os, const Tabs &tab, const Array< int > &a, int cols)
ParameterList	mergeParamLists (const ParameterList &pDef, const ParameterList &pIn)
string	searchForFile (const std::string &name)
string	getPathStr ()
Array< string >	parsePathStr ()
Point	operator* (const double &a, const Point &p)
Point	cross (const Point &x, const Point &y)
	SUNDANCE_UNARY_FUNCTOR (reciprocal, StdReciprocal,"reciprocal function", NonzeroDomain(), 1.0/x[i],-f[i]f[i],-2.0 df[i]/x[i]) SUNDANCE_UNARY_FUNCTOR(fabs
absolute	UnboundedDomain ()
template<typename A , typename B >
bool	typeLessThan (const A a, const B b)
int	mapExSideToMissingVertex (int dim, int exFaceID)
Array< int >	exSideVertPos (int dim, int f)
Array< int >	ufcSideVertPos (int dim, int f)
Array< int >	ufcSide (int f, const Array< int > &verts)
Array< int >	exSide (int f, const Array< int > &verts)
void	vertexSort (Array< int > &verts, int *key)
void	getKeyedPerm (int key, Array< int > &digits)
	Return the permutation that produces the specified key.
int	iPow (int base, int n)
	Compute base^N.
int	exVertPosToUFCVertPos (int meshDim, int permKey, int exVertPos)
int	exFacetIndexToUFCFacetIndex (int meshDim, int permKey, int exFacetID)
int	ufcFacetIndexToExFacetIndex (int meshDim, int ufcFacetID)
template<class T >
void	insertionSort (Teuchos::Array< T > &A)
MultipleDeriv	makeDeriv (const Expr &a)
MultipleDeriv	makeDeriv (const Expr &a, const Expr &b)
MultipleDeriv	makeDeriv (const Expr &a, const Expr &b, const Expr &c)
AlgebraSpecifier	scalarAlgebraSpec ()
	AlgebraSpecifier.
AlgebraSpecifier	normalAlgebraSpec ()
	AlgebraSpecifier.
AlgebraSpecifier	coordAlgebraSpec (int dir)
	AlgebraSpecifier.
std::ostream &	operator<< (std::ostream &os, const ComputationType &ct)
Deriv	coordDeriv (int d)
Deriv	coordDeriv (const MultiIndex &mi)
Deriv	funcDeriv (const SymbolicFuncElement *symbFunc)
Deriv	funcDeriv (const SymbolicFuncElement *symbFunc, const MultiIndex &mi)
Deriv	funcDeriv (const SymbolicFunc *symbFunc)
Deriv	funcDeriv (const SymbolicFunc *symbFunc, const MultiIndex &mi)
Deriv	normalDeriv (const SymbolicFuncElement *symbFunc)
Deriv	divergenceDeriv (const SymbolicFunc *symbFunc)
FunctionIdentifier	makeFuncID (int tensorOrder)
RCP< const CommonFuncDataStub >	getSharedFunctionData (const FuncElementBase *f)
Set< MultipleDeriv >	applyTx (const Set< MultipleDeriv > &S, const MultiIndex &x)
	Tranform the input set S as follows: for each multiple derivative in S, apply the multiindex x to each of its component functional derivatives in turn.
Set< MultipleDeriv >	Xx (const MultiIndex &x)
Set< MultipleDeriv >	applyZx (const Set< MultipleDeriv > &W, const MultiIndex &x)
	Filter the input set W, allowing only coordinate derivatives in the direction x and functional derivatives whose associated functions have nonzero evaluation points.
int	factorial (const MultipleDeriv &ms)
MultipleDeriv	makeMultiDeriv (const Deriv &d)
bool	hasParameter (const MultipleDeriv &d)
Array< Array< std::pair< int, Array< MultipleDeriv > > > >	chainRuleDerivsOfArgs (int nArgs, const MultiSet< int > &bSet, const MultipleDeriv &c)
Array< Array< Array< int > > >	bStructure (const Array< int > &b, const Array< Array< int > > &tmp)
Array< OrderedPair< Array < MultiSet< int > >, Array < MultipleDeriv > > >	chainRuleTerms (int s, const MultiSet< int > &lambda, const MultipleDeriv &nu)
Set< MultipleDeriv >	multisetSubsets (const MultipleDeriv &x)
	Return all subsets of a multiset.
int	chainRuleMultiplicity (const MultipleDeriv &nu, const Array< MultiSet< int > > &K, const Array< MultipleDeriv > &L)
	Return the multiplicity of a chain rule term.
Expr	makeZeros (const Expr &e)
Expr	CellNormalExpr (int dimension, const std::string &name)
Expr	CellTangentExpr (int dimension, const std::string &name)
Expr	Complex (const Expr &re, const Expr &im)
Expr	List (const Expr &a)
Expr	List (const Expr &a, const Expr &b)
Expr	List (const Expr &a, const Expr &b, const Expr &c)
Expr	List (const Expr &a, const Expr &b, const Expr &c, const Expr &d)
Expr	List (const Expr &a, const Expr &b, const Expr &c, const Expr &d, const Expr &e)
Expr	List (const Expr &a, const Expr &b, const Expr &c, const Expr &d, const Expr &e, const Expr &f)
Expr	List (const Expr &a, const Expr &b, const Expr &c, const Expr &d, const Expr &e, const Expr &f, const Expr &g)
Expr	List (const Expr &a, const Expr &b, const Expr &c, const Expr &d, const Expr &e, const Expr &f, const Expr &g, const Expr &h)
Expr	pow (const Expr &expr, const double &p)
Expr	gradient (int dim)
Expr	div (const Expr &f)
Expr	cross (const Expr &a, const Expr &b)
Expr	curl (const Expr &f)
Expr	colonProduct (const Expr &A, const Expr &B)
Expr	outerProduct (const Expr &A, const Expr &B)
bool	isVector (const Expr &x, int &N)
bool	isSquareMatrix (const Expr &x, int &N)
Array< CFMeshPair >	resolvePair (const CFMeshPair &a, const CFMeshPair &b)
Array< CFMeshPair >	resolveSets (const Array< CFMeshPair > &s)
Array< CFMeshPair >	findDisjointFilters (const Array< CellFilter > &filters, const Array< Set< int > > &funcs, const Mesh &mesh)
std::ostream &	operator<< (std::ostream &os, const CFMeshPair &c)
std::ostream &	operator<< (std::ostream &os, const CellJacobianBatch &J)
std::string	toString (const CellType &c)
	Return a std::string representation of the cell type.
int	dimension (const CellType &c)
	Return the dimension of the cell type.
int	numFacets (const CellType &c, int facetDim)
	Return the number of faces of a given facet dimension for a cell type.
CellType	facetType (const CellType &c, int facetDim, int facetIndex)
std::ostream &	operator<< (std::ostream &os, const CellType &c)
	output stream operator for `CellType`.
bool	cellContainsPoint (const Mesh &mesh, int cellDim, int cellLID, const double *x, Array< int > &facetLID)
double	volume (const Mesh &mesh, int cellDim, int cellLID)
double	orient2D (const double A, const double B, const double *x)
int	findEnclosingCell (const Mesh &mesh, int cellDim, int initialGuessLID, const double *x)
Point	pullback (const Mesh &mesh, int cellDim, int cellLID, const double *x)
void	printCell (const Mesh &mesh, int cellLID)
void	maximalNeighbors (const Mesh &mesh, int cellDim, int cellLID, const Array< int > &facetLID, std::list< int > &rtn)
Point	cross3 (const Point &a, const Point &b)
double	cross2 (const Point &a, const Point &b)
CellSet	connectedNodeSet (const CellFilter &f, const Mesh &mesh)
RCP< Array< int > >	cellSetToLIDArray (const CellSet &cs)
double	evaluateIntegral (const Mesh &mesh, const Expr &expr)
std::ostream &	operator<< (std::ostream &os, const IntegrationCellSpecifier &s)
Array< Array< BasisFamily > >	testBasisArray (const RCP< FunctionSupportResolver > &fsr)
Array< Array< BasisFamily > >	unkBasisArray (const RCP< FunctionSupportResolver > &fsr)
Array< RCP < BasisDOFTopologyBase > >	replicate (const RCP< BasisDOFTopologyBase > &model, int n)
Mesh	unfoldPeriodicMesh (const Mesh &mesh)
	"Unfold" a periodic mesh to produce a 1D mesh without duplicated vertices
DiscreteSpace	unfoldPeriodicDiscreteSpace (const DiscreteSpace &space)
	"Unfold" a periodic discrete space, producing a non-periodic discretization of the same interval
Expr	unfoldPeriodicDiscreteFunction (const Expr &f, const string &name="")
	"Unfold" a discrete function defined on a periodic mesh, producing a function usable on a non-periodic mesh of the same interval
void	handleException (std::exception &e)
bool	passFailTest (bool pass)
bool	passFailTest (double error, double tol)
bool	passFailTest (const std::string &statusMsg, bool status, double error, double tol)
int &	testStatus ()
CommandLineProcessor &	clp ()
int	init (int argc, char **argv)
int	finalize ()
void	setOption (const std::string &optionName, int &value, const std::string &helpMsg)
void	setOption (const std::string &optionName, double &value, const std::string &helpMsg)
void	setOption (const std::string &optionName, std::string &value, const std::string &helpMsg)
void	setOption (const std::string &optionTrueName, const std::string &optionFalseName, bool &value, const std::string &helpMsg)
std::ostream &	operator<< (std::ostream &os, const CoordinateSystem &cs)
double	L2Norm (const Mesh &mesh, const CellFilter &domain, const Expr &f, const QuadratureFamily &quad)
double	H1Seminorm (const Mesh &mesh, const CellFilter &filter, const Expr &f, const QuadratureFamily &quad)
double	H1Norm (const Mesh &mesh, const CellFilter &filter, const Expr &f, const QuadratureFamily &quad)
Expr	readNodalFields (const MeshSource &mesher, const Mesh &mesh, const VectorType< double > &vecType)
	Read the node-based fields from a mesher.
Expr	readSerialGridField (const std::string &gridFile, double ax, double bx, double ay, double by, const VectorType< double > &vecType, const MeshType &meshType, Mesh &mesh)
	Read a 2D field stored in simple ASCII format.
double	readbackTester (const std::string &infile, const MPIComm &comm)
	This function reads in an exodus file, discretizes a function on it, and computes some functional on it.
void	invertMap (const Map< int, int > &in, Map< int, int > &out)
void	serialPartition (const RCP< SerialPartitionerBase > &part, int numProc, const MeshSource &mesher, const std::string &outfile)
	Partition a mesh and write the parts to exodus files.
Expr	NitschePoissonDirichletBC (int dim, const CellFilter &cells, const QuadratureFamily &quad, const Expr &kappa, const Expr &v, const Expr &u, const Expr &uBC, const double &gamma)
	This function forms the expressions that apply the Dirichlet BC $u=u_{BC}$ via Nitsche's method for the Poisson operator.
Expr	NitscheStokesNoSlipBC (const CellFilter &cells, const QuadratureFamily &quad, const Expr &nu, const Expr &v, const Expr &q, const Expr &u, const Expr &p, const Expr &uBC, const double &gamma1, const double &gamma2)
	This function forms the expressions that apply the Dirichlet BC ${\bf u}={\bf u}_{BC}$ via Nitsche's method for the Stokes operator.
bool	checkErrorNorms (const Mesh &mesh, const CellFilter &filter, const Expr &numSoln, const Expr &exactSoln, const QuadratureFamily &quad, double L2Tol, double H1SemiTol, double H1Tol)
	This function checks the L2 and H1 norms and the H1 seminorm of an error against a specified tolerance.
double	fitPower (const Array< double > &h, const Array< double > &err)
	Compute the exponent that best fits the measured errors to a power law $\epsilon=A h^p$ .
Array< std::pair< int, int > >	vectorDimStructure (const Array< BasisFamily > &basis)
Array< std::pair< int, int > >	vectorDimStructure (const BasisFamily &basis)
bool	basisRestrictableToBoundary (const BasisFamily &b)
Array< BasisFamily >	replicate (const BasisFamily &b, int n)
Array< BasisFamily >	replicate (const Array< BasisFamily > &b, int n)
static Time &	getLocalValsTimer ()
static Time &	dfCtorTimer ()
void	updateDiscreteFunction (const Expr &newVals, Expr old)
void	addVecToDiscreteFunction (Expr df, const Vector< double > &v)
Expr	copyDiscreteFunction (const Expr &u0, const string &name)
void	setDiscreteFunctionVector (Expr u, const Vector< double > &v)
Vector< double >	getDiscreteFunctionVector (const Expr &u)
Mesh	getDiscreteFunctionMesh (const Expr &u)
std::string	describeFunction (const Expr &f)
void	printQuad (std::ostream &os, const Array< Point > &pts, const Array< double > &wgts)
Variables
	StdFabs
absolute	value

Typedef Documentation

typedef std::set<int> Sundance::ColSetType

Definition at line 66 of file SundanceAssembler.hpp.

typedef OrderedPair<MultipleDeriv, MultipleDeriv> Sundance::DerivPair

Definition at line 46 of file SundanceMultipleDeriv.hpp.

typedef Sundance::Map<DerivPair, int> Sundance::ProductRulePerms

Definition at line 51 of file SundanceMultipleDeriv.hpp.

typedef OrderedTriple<OrderedHandle<CellFilterStub>, OrderedHandle<QuadratureFamilyStub>, WatchFlag> Sundance::RegTriple

Definition at line 53 of file SundanceRegionQuadCombo.hpp.

Enumeration Type Documentation

enum Sundance::AlgebraType

Enumerator:

VectorAT
NormalAT
CoordCompAT
ScalarAT

Definition at line 41 of file SundanceAlgebraSpecifier.hpp.

enum Sundance::CellVectorExprType

Enumerator:

CellNormalVector
CellTangentSpace

Definition at line 44 of file SundanceCellVectorExpr.hpp.

enum ComputationType [related, inherited]

Specifier of what sort of calculation is to be done with an equation set

Enumerator:

MatrixAndVector
VectorOnly
FunctionalOnly
FunctionalAndGradient
Sensitivities

Definition at line 44 of file SundanceComputationType.hpp.

enum Sundance::DerivState

DerivState can be used to classify the known state of each functional derivative at any node in the expression tree.

ZeroDeriv means the derivative is structurally zero at that node -- note that derivatives that are nonzero at a root node can be structurally zero at some child node. ConstantDeriv means that the derivative is known to be a constant (in space) at that node. VectorDeriv means that the derivative is non-zero, non-constant, i.e., a vector of values.

Enumerator:

ZeroDeriv
ConstantDeriv
VectorDeriv

Definition at line 63 of file SundanceSparsitySuperset.hpp.

enum Sundance::DerivSubsetSpecifier

Enumerator:

AllNonzeros
RequiredNonzeros
VariableNonzeros
ConstantNonzeros

Definition at line 66 of file SundanceEvaluatableExpr.hpp.

enum Sundance::DerivType

Enumerator:

CoordDT
FunctionalDT
NullDT

Definition at line 49 of file SundanceDeriv.hpp.

enum Sundance::IntegrationCellSpecifier

Enumerator:

NoTermsNeedCofacets
AllTermsNeedCofacets
SomeTermsNeedCofacets

Definition at line 43 of file SundanceIntegrationCellSpecifier.hpp.

enum Sundance::MeshEntityOrder

Identifier for ordering convention.

Enumerator:

UFCMeshOrder
ExodusMeshOrder

Definition at line 50 of file SundanceMeshBase.hpp.

enum Sundance::SpatialDerivType

Enumerator:

IdentitySDT
PartialSDT
NormalSDT
DivSDT

Definition at line 42 of file SundanceSpatialDerivSpecifier.hpp.

enum Sundance::ThresholdEventType

Enumerator:

AnyAbove
AllAbove
AnyBelow
AllBelow

Definition at line 64 of file SundanceEventDetector.hpp.

Function Documentation

void Sundance::addVecToDiscreteFunction	(	Expr	df,
		const Vector< double > &	v
	)			`[related]`

Definition at line 207 of file SundanceDiscreteFunction.cpp.

References getDiscreteFunctionVector(), setDiscreteFunctionVector(), and Playa::Vector< Scalar >::update().

Set< MultipleDeriv > Sundance::applyTx	(	const Set< MultipleDeriv > &	S,
		const MultiIndex &	x
	)

Tranform the input set S as follows: for each multiple derivative in S, apply the multiindex x to each of its component functional derivatives in turn.

Note that the multiindex may have negative indices. Results with negative multiindices are ignored.

Definition at line 261 of file SundanceMultipleDeriv.cpp.

References Sundance::Set< Key, Compare >::begin(), Sundance::Deriv::derivWrtMultiIndex(), Sundance::Set< Key, Compare >::end(), Sundance::Deriv::isFunctionalDeriv(), Sundance::MultiIndex::isValid(), Sundance::SpatialDerivSpecifier::mi(), Sundance::Deriv::opOnFunc(), Sundance::Set< Key, Compare >::put(), and Sundance::MultiSet< Key >::put().

Referenced by Sundance::DiffOp::internalDetermineR(), Sundance::DiffOp::internalFindV(), and Sundance::DiffOp::internalFindW().

Set< MultipleDeriv > Sundance::applyZx	(	const Set< MultipleDeriv > &	W,
		const MultiIndex &	x
	)

Filter the input set W, allowing only coordinate derivatives in the direction x and functional derivatives whose associated functions have nonzero evaluation points.

This function is used in the spatial/functional chain rule to identify those terms resulting from differentiation wrt x or functional derivatives.

Definition at line 302 of file SundanceMultipleDeriv.cpp.

References Sundance::Set< Key, Compare >::begin(), Sundance::Set< Key, Compare >::end(), Sundance::MultipleDeriv::order(), Sundance::MultiIndex::order(), and Sundance::Set< Key, Compare >::put().

Referenced by Sundance::DiffOp::internalDetermineR(), Sundance::DiffOp::internalFindV(), and Sundance::DiffOp::internalFindW().

bool Sundance::basisRestrictableToBoundary ( const BasisFamily & b ) [related]

Definition at line 229 of file SundanceBasisFamily.cpp.

References Playa::Handle< PointerType >::ptr().

Referenced by Sundance::ElementIntegral::ElementIntegral().

Set< Pair< MultiSet< int > > > Sundance::binaryPartition ( const MultiSet< int > & m )

Return the size-2 partitions of a multiset.

This is used in a recursive algorithm to determine all partitions of a multset.

Definition at line 283 of file SundanceCombinatorialUtils.cpp.

References Sundance::Set< Key, Compare >::begin(), countMap(), Sundance::Set< Key, Compare >::end(), loadPartitions(), Sundance::Set< Key, Compare >::merge(), Sundance::Set< Key, Compare >::put(), and Sundance::Set< Key, Compare >::size().

Referenced by multisetPartitions().

template<class T >

Array<Array<Array<T> > > Sundance::binnings	(	const MultiSet< T > &	mu,
		int	n
	)			`[inline]`

Return the distinct arrangements of the given multiset into n bins.

Definition at line 261 of file SundanceCombinatorialUtils.hpp.

References compositions(), and indexArrangements().

Array<Array<Array<int> > > Sundance::binnings	(	const MultiSet< int > &	mu,
		int	n
	)

Definition at line 428 of file SundanceCombinatorialUtils.cpp.

References compositions(), and indexArrangements().

Referenced by Sundance::ChainRuleEvaluator::chainRuleBins().

Array< int > Sundance::bitsOfAnInteger	(	int	x,
		int	n
	)

Compute the n bits of an integer x < 2^n.

The bits are ordered least-to-most significant.

Definition at line 583 of file SundanceCombinatorialUtils.cpp.

References pow2().

Referenced by multisetSubsets(), and Sundance::MultipleDeriv::productRulePermutations().

Array<Array<Array<int> > > Sundance::bStructure	(	const Array< int > &	b,
		const Array< Array< int > > &	tmp
	)			`[related]`

Definition at line 1100 of file SundanceExprWithChildren.cpp.

Referenced by chainRuleDerivsOfArgs().

bool Sundance::cellContainsPoint	(	const Mesh &	mesh,
		int	cellDim,
		int	cellLID,
		const double *	x,
		Array< int > &	facetLID
	)			`[related]`

Definition at line 44 of file SundanceGeomUtils.cpp.

References Sundance::Mesh::getFacetArray(), Sundance::Mesh::nodePosition(), Sundance::Mesh::nodePositionView(), and orient2D().

Referenced by findEnclosingCell().

Expr Sundance::CellNormalExpr	(	int	dimension,
		const std::string &	name
	)			`[related]`

Definition at line 49 of file SundanceCellVectorExpr.cpp.

References Teuchos::toString().

Referenced by NitschePoissonDirichletBC(), and NitscheStokesNoSlipBC().

RCP< Array< int > > Sundance::cellSetToLIDArray ( const CellSet & cs )

Definition at line 110 of file SundanceFieldBase.cpp.

References Sundance::CellSet::begin(), and Sundance::CellSet::end().

Referenced by Sundance::ExodusWriter::findBlocks(), and Sundance::ExodusWriter::findNodeSets().

Expr Sundance::CellTangentExpr	(	int	dimension,
		const std::string &	name
	)			`[related]`

Definition at line 61 of file SundanceCellVectorExpr.cpp.

References Teuchos::toString().

Array<Array<std::pair<int, Array<MultipleDeriv> > > > Sundance::chainRuleDerivsOfArgs	(	int	nArgs,
		const MultiSet< int > &	bSet,
		const MultipleDeriv &	c
	)			`[related]`

Definition at line 993 of file SundanceExprWithChildren.cpp.

References bStructure(), Sundance::Map< Key, Value, Compare >::containsKey(), indexCombinations(), nonNegCompositions(), Sundance::MultipleDeriv::order(), Sundance::MultiSet< Key >::put(), and Sundance::Map< Key, Value, Compare >::put().

int Sundance::chainRuleMultiplicity	(	const MultipleDeriv &	nu,
		const Array< MultiSet< int > > &	K,
		const Array< MultipleDeriv > &	L
	)

Return the multiplicity of a chain rule term.

Definition at line 1204 of file SundanceExprWithChildren.cpp.

References factorial().

Referenced by Sundance::ChainRuleEvaluator::init().

Array<OrderedPair<Array<MultiSet<int> >, Array<MultipleDeriv> > > Sundance::chainRuleTerms	(	int	s,
		const MultiSet< int > &	lambda,
		const MultipleDeriv &	nu
	)			`[related]`

Definition at line 1122 of file SundanceExprWithChildren.cpp.

References distinctIndexTuples(), Sundance::Set< Key, Compare >::elements(), multisetCompositions(), multisetSubsets(), and Sundance::MultipleDeriv::product().

Referenced by Sundance::ChainRuleEvaluator::init().

bool Sundance::checkErrorNorms	(	const Mesh &	mesh,
		const CellFilter &	filter,
		const Expr &	numSoln,
		const Expr &	exactSoln,
		const QuadratureFamily &	quad,
		double	L2Tol,
		double	H1SemiTol,
		double	H1Tol
	)

This function checks the L2 and H1 norms and the H1 seminorm of an error against a specified tolerance.

Definition at line 53 of file SundanceProblemTesting.cpp.

References H1Norm(), H1Seminorm(), L2Norm(), and Playa::Out::root().

bool Sundance::checkForFailures ( const MPIComm & comm )

Call this function after exception-free completion of a try/catch block preceding a collective operation.

This function will do an AllReduce in conjunction with calls to either this function or its partner, reportFailure(), on the other processors. If a failure has been reported by another processor, the call to checkForFailures() will return true and an exception can be thrown.

Definition at line 18 of file SundanceCollectiveExceptionCheck.cpp.

References Playa::MPIComm::allReduce(), Playa::MPIDataType::intType(), and Playa::MPIOp::sumOp().

Referenced by Sundance::BasicSimplicialMesh::assignIntermediateCellGIDs(), Sundance::PartitionedLineMesher::fillMesh(), Sundance::BasicSimplicialMesh::resolveEdgeOwnership(), and Sundance::BasicSimplicialMesh::synchronizeNeighborLists().

CommandLineProcessor& Sundance::clp ( )

Definition at line 89 of file Sundance.cpp.

References Sundance::SundanceGlobal::clp().

Expr Sundance::colonProduct	(	const Expr &	A,
		const Expr &	B
	)			`[related]`

Definition at line 91 of file SundanceVectorCalculus.cpp.

References isSquareMatrix().

Expr Sundance::Complex	(	const Expr &	re,
		const Expr &	im
	)			`[related]`

Definition at line 995 of file SundanceExpr.cpp.

References Sundance::Expr::isComplex(), Playa::Handle< PointerType >::ptr(), Sundance::Expr::size(), and Sundance::Expr::totalSize().

Array< Array< Array< int > > > Sundance::compositions ( int n )

Return compositions of an integer.

Definition at line 179 of file SundanceCombinatorialUtils.cpp.

References partitionInteger(), and sort().

Referenced by binnings(), Sundance::ExprWithChildren::internalFindC(), Sundance::ExprWithChildren::internalFindV(), Sundance::ExprWithChildren::internalFindW(), and Sundance::ChainRuleEvaluator::nComps().

CellSet Sundance::connectedNodeSet	(	const CellFilter &	f,
		const Mesh &	mesh
	)

Definition at line 80 of file SundanceFieldBase.cpp.

References Sundance::CellSet::begin(), Sundance::CellSet::dimension(), Sundance::CellSet::end(), Sundance::CellFilter::getCells(), Sundance::Mesh::getFacetLIDs(), PointCell, and Sundance::Set< Key, Compare >::put().

Referenced by Sundance::ExodusWriter::findNodeSets().

AlgebraSpecifier Sundance::coordAlgebraSpec ( int dir ) [related]

AlgebraSpecifier.

Definition at line 140 of file SundanceAlgebraSpecifier.cpp.

Referenced by Sundance::FunctionIdentifier::createComponent().

Deriv Sundance::coordDeriv ( const MultiIndex & mi ) [related]

Definition at line 322 of file SundanceDeriv.cpp.

References Sundance::MultiIndex::firstOrderDirection().

Deriv Sundance::coordDeriv ( int d ) [related]

Definition at line 317 of file SundanceDeriv.cpp.

Referenced by Sundance::DiffOp::internalDetermineR(), Sundance::CoordExpr::internalFindC(), Sundance::DiscreteFuncElement::internalFindV(), Sundance::DiscreteFuncElement::internalFindW(), Sundance::CoordExpr::internalFindW(), and Xx().

Expr Sundance::copyDiscreteFunction	(	const Expr &	u0,
		const string &	name
	)			`[related]`

Definition at line 214 of file SundanceDiscreteFunction.cpp.

References Playa::Vector< Scalar >::copy(), Sundance::DiscreteFunction::discreteSpace(), Sundance::DiscreteFunctionData::getData(), Sundance::DiscreteFunctionData::getVector(), Sundance::DiscreteFunction::getVector(), Playa::Handle< PointerType >::ptr(), Sundance::Expr::size(), and Teuchos::toString().

Referenced by Sundance::DoublingStepController::run().

Map< int, int > Sundance::countMap ( const MultiSet< int > & m )

Given a multiset, create a mapping from entry to number of repetitions in the multisets.

Definition at line 387 of file SundanceCombinatorialUtils.cpp.

References Sundance::Map< Key, Value, Compare >::containsKey(), and Sundance::Map< Key, Value, Compare >::put().

Referenced by binaryPartition().

Expr Sundance::cross	(	const Expr &	a,
		const Expr &	b
	)			`[related]`

Definition at line 61 of file SundanceVectorCalculus.cpp.

References cross(), List(), and Sundance::Expr::size().

Point Sundance::cross	(	const Point &	x,
		const Point &	y
	)			`[inline]`

Definition at line 271 of file SundancePoint.hpp.

Referenced by cross(), curl(), Sundance::GaussLobattoQuadrature::getAdaptedQuadWeights_surf(), Sundance::BasicSimplicialMesh::getCellDiameters(), Sundance::CurveIntegralCalc::getCurveQuadPoints_line(), Sundance::HNMesh3D::getJacobians(), Sundance::BasicSimplicialMesh::getJacobians(), Sundance::CurveIntegralCalc::getSurfQuadPoints(), and Sundance::MeshBase::outwardNormals().

double Sundance::cross2	(	const Point &	a,
		const Point &	b
	)			`[inline]`

Definition at line 266 of file SundanceRivaraElement.cpp.

Referenced by Sundance::Rivara::Element::volume().

Point Sundance::cross3	(	const Point &	a,
		const Point &	b
	)			`[inline]`

Definition at line 260 of file SundanceRivaraElement.cpp.

Referenced by Sundance::Rivara::Element::volume().

Expr Sundance::curl ( const Expr & f ) [related]

Definition at line 84 of file SundanceVectorCalculus.cpp.

References cross(), gradient(), and Sundance::Expr::size().

std::string Sundance::describeFunction ( const Expr & f )

Definition at line 44 of file SundanceFuncWithBasis.cpp.

References Sundance::FunctionWithID::fid(), Sundance::FuncElementBase::name(), Playa::Handle< PointerType >::ptr(), Sundance::Expr::size(), and Sundance::FunctionIdentifier::toString().

static Time& Sundance::dfCtorTimer ( ) [static]

Definition at line 58 of file SundanceDiscreteFunction.cpp.

Referenced by Sundance::DiscreteFunction::DiscreteFunction().

Array< Array< int > > Sundance::distinctIndexTuples	(	int	m,
		int	n
	)

Generate the (n-choose-m) distinct index combinations for choosing m entries from an array of n elements.

Definition at line 550 of file SundanceCombinatorialUtils.cpp.

Referenced by chainRuleTerms().

Expr Sundance::div ( const Expr & f ) [related]

Definition at line 49 of file SundanceVectorCalculus.cpp.

References Sundance::Expr::size().

Deriv Sundance::divergenceDeriv ( const SymbolicFunc * symbFunc )

Definition at line 357 of file SundanceDeriv.cpp.

References DivSDT.

double Sundance::evaluateIntegral	(	const Mesh &	mesh,
		const Expr &	expr
	)

Definition at line 52 of file SundanceFunctionalEvaluator.cpp.

References Sundance::FunctionalEvaluator::evaluate().

Referenced by Sundance::ForwardProblemTestBase::cellSize(), H1Norm(), L2Norm(), Sundance::LinearEigenproblem::makeEigenfunctions(), and readbackTester().

int Sundance::exFacetIndexToUFCFacetIndex	(	int	meshDim,
		int	permKey,
		int	exFacetID
	)

Definition at line 164 of file SundanceVertexSort.cpp.

References exVertPosToUFCVertPos(), and mapExSideToMissingVertex().

Referenced by Sundance::ExodusMeshReader::fillMesh().

Array< int > Sundance::exSide	(	int	f,
		const Array< int > &	verts
	)

Definition at line 96 of file SundanceVertexSort.cpp.

References exSideVertPos().

Array< int > Sundance::exSideVertPos	(	int	dim,
		int	sideIndex
	)

Definition at line 34 of file SundanceVertexSort.cpp.

Referenced by exSide().

int Sundance::exVertPosToUFCVertPos	(	int	meshDim,
		int	permKey,
		int	exVertPos
	)

Definition at line 150 of file SundanceVertexSort.cpp.

References getKeyedPerm(), and Playa::Out::os().

Referenced by exFacetIndexToUFCFacetIndex().

int Sundance::factorial ( const MultipleDeriv & ms )

Definition at line 340 of file SundanceMultipleDeriv.cpp.

References Sundance::Map< Key, Value, Compare >::containsKey(), and Sundance::Map< Key, Value, Compare >::put().

int Sundance::factorial ( const MultiSet< int > & ms ) [inline]

Definition at line 279 of file SundanceCombinatorialUtils.hpp.

References Sundance::Map< Key, Value, Compare >::containsKey(), and Sundance::Map< Key, Value, Compare >::put().

Referenced by chainRuleMultiplicity().

int Sundance::finalize ( )

Definition at line 97 of file Sundance.cpp.

References Sundance::SundanceGlobal::finalize().

Referenced by main().

Array< CFMeshPair > Sundance::findDisjointFilters	(	const Array< CellFilter > &	filters,
		const Array< Set< int > > &	funcs,
		const Mesh &	mesh
	)

Definition at line 172 of file SundanceCFMeshPair.cpp.

References csPartitionTimer(), and resolveSets().

Referenced by Sundance::DOFMapBuilder::funcDomains().

int Sundance::findEnclosingCell	(	const Mesh &	mesh,
		int	cellDim,
		int	initialGuessLID,
		const double *	x
	)			`[related]`

Definition at line 133 of file SundanceGeomUtils.cpp.

References cellContainsPoint(), Sundance::Set< Key, Compare >::contains(), maximalNeighbors(), and Sundance::Set< Key, Compare >::put().

double Sundance::fitPower	(	const Array< double > &	h,
		const Array< double > &	err
	)

Compute the exponent $p$ that best fits the measured errors to a power law $\epsilon=A h^p$ .

Definition at line 94 of file SundanceProblemTesting.cpp.

References pow().

Referenced by Sundance::ForwardProblemTestBase::runTestSequence().

Deriv Sundance::funcDeriv	(	const SymbolicFunc *	symbFunc,
		const MultiIndex &	mi
	)			`[related]`

Definition at line 345 of file SundanceDeriv.cpp.

Deriv Sundance::funcDeriv ( const SymbolicFunc * symbFunc ) [related]

Definition at line 339 of file SundanceDeriv.cpp.

Deriv Sundance::funcDeriv	(	const SymbolicFuncElement *	symbFunc,
		const MultiIndex &	mi
	)			`[related]`

Definition at line 333 of file SundanceDeriv.cpp.

Deriv Sundance::funcDeriv ( const SymbolicFuncElement * symbFunc ) [related]

Definition at line 328 of file SundanceDeriv.cpp.

Referenced by Sundance::FunctionalPolynomial::FunctionalPolynomial(), Sundance::UnknownParameterElement::internalFindC(), Sundance::SymbolicFuncElement::internalFindC(), Sundance::UnknownParameterElement::internalFindW(), Sundance::SymbolicFuncElement::internalFindW(), and makeDeriv().

Mesh Sundance::getDiscreteFunctionMesh ( const Expr & u ) [related]

Definition at line 324 of file SundanceDiscreteFunction.cpp.

References Sundance::DiscreteFunctionData::getData(), Sundance::DiscreteFunctionData::mesh(), Sundance::DiscreteFunction::mesh(), Playa::Handle< PointerType >::ptr(), and Sundance::Expr::size().

Referenced by Sundance::DoublingStepController::write().

Vector<double> Sundance::getDiscreteFunctionVector ( const Expr & u ) [related]

Definition at line 289 of file SundanceDiscreteFunction.cpp.

References Sundance::DiscreteFunctionData::getData(), Sundance::DiscreteFunctionData::getVector(), Sundance::DiscreteFunction::getVector(), Playa::Handle< PointerType >::ptr(), and Sundance::Expr::size().

Referenced by addVecToDiscreteFunction(), Sundance::ThresholdEventDetector::checkForEvent(), Sundance::DefaultExprComparison::diff(), Sundance::PDEConstrainedObjBase::eval(), Sundance::PDEConstrainedObjBase::evalGrad(), Sundance::PDEConstrainedObjBase::getInit(), Sundance::NLOp::getInitialGuess(), Sundance::DoublingStepController::run(), Sundance::NLOp::setInitialGuess(), and updateDiscreteFunction().

void Sundance::getKeyedPerm	(	int	key,
		Array< int > &	digits
	)

Return the permutation that produces the specified key.

Definition at line 129 of file SundanceVertexSort.cpp.

References iPow().

Referenced by exVertPosToUFCVertPos().

static Time& Sundance::getLocalValsTimer ( ) [static]

Definition at line 52 of file SundanceDiscreteFunction.cpp.

Referenced by Sundance::DiscreteFunction::getLocalValues().

std::string Sundance::getPathStr ( )

Definition at line 61 of file SundancePathUtils.cpp.

Referenced by parsePathStr().

RCP< const CommonFuncDataStub > Sundance::getSharedFunctionData ( const FuncElementBase * f )

Definition at line 579 of file SundanceFunctionSupportResolver.cpp.

References Sundance::SymbolicFuncElement::commonData().

Referenced by Sundance::FunctionSupportResolver::FunctionSupportResolver().

Expr Sundance::gradient ( int dim ) [related]

Definition at line 39 of file SundanceVectorCalculus.cpp.

Referenced by curl(), Sundance::Lagrange::evalOnquad(), Sundance::Lagrange::evalOnTriangle(), Sundance::EdgeLocalizedBasis::evalOnTriangle(), Sundance::Bubble::evalOnTriangle(), H1Norm(), H1Seminorm(), NitschePoissonDirichletBC(), NitscheStokesNoSlipBC(), Coupled1DTest::prob(), Helmholtz1DTest::prob(), Poisson1DTest::prob(), and SimplePoisson1DTest::prob().

double Sundance::H1Norm	(	const Mesh &	mesh,
		const CellFilter &	filter,
		const Expr &	f,
		const QuadratureFamily &	quad
	)			`[related]`

Definition at line 186 of file SundanceFunctional.cpp.

References evaluateIntegral(), gradient(), and Sundance::Mesh::spatialDim().

Referenced by checkErrorNorms().

double Sundance::H1Seminorm	(	const Mesh &	mesh,
		const CellFilter &	filter,
		const Expr &	f,
		const QuadratureFamily &	quad
	)			`[related]`

Definition at line 176 of file SundanceFunctional.cpp.

References gradient(), L2Norm(), and Sundance::Mesh::spatialDim().

Referenced by checkErrorNorms().

void Sundance::handleException ( std::exception & e )

Definition at line 70 of file Sundance.cpp.

References Sundance::SundanceGlobal::handleException().

Referenced by main().

bool Sundance::hasParameter ( const MultipleDeriv & d )

Definition at line 368 of file SundanceMultipleDeriv.cpp.

template<class T >

Array<Array<Array<T> > > Sundance::indexArrangements	(	const MultiSet< T > &	mu,
		const Array< int > &	k
	)			`[inline]`

Definition at line 220 of file SundanceCombinatorialUtils.hpp.

Array<Array<Array<int> > > Sundance::indexArrangements	(	const MultiSet< int > &	mu,
		const Array< int > &	k
	)

Definition at line 447 of file SundanceCombinatorialUtils.cpp.

Referenced by binnings().

Array< Array< int > > Sundance::indexCombinations ( const Array< int > & s )

For a given integer vector of length N, find all combinations of integers (i_1, 1_2, .

.. i_N) such that $0 \le i_j < s_j$ . For example, if $ s = (2,3) $ , return

 { {0,0}, {0,1}, {0,2}, {1,0}, {1,1}, {1,2} }

Definition at line 399 of file SundanceCombinatorialUtils.cpp.

Referenced by chainRuleDerivsOfArgs().

int Sundance::init	(	int *	argc,
		char ***	argv
	)

Definition at line 93 of file Sundance.cpp.

References Sundance::SundanceGlobal::init().

Referenced by main(), Sundance::NonlinearUnaryOpEvaluator::NonlinearUnaryOpEvaluator(), and Sundance::UserDefOpEvaluator::UserDefOpEvaluator().

template<class T >

void Sundance::insertionSort ( Teuchos::Array< T > & A ) [inline]

Definition at line 19 of file SundanceVertexSort.hpp.

Referenced by vertexSort().

IntVec Sundance::intVec	(	int	a,
		int	b,
		int	c,
		int	d,
		int	e
	)			`[inline]`

Definition at line 148 of file SundanceIntVec.hpp.

IntVec Sundance::intVec	(	int	a,
		int	b,
		int	c,
		int	d
	)			`[inline]`

Definition at line 141 of file SundanceIntVec.hpp.

IntVec Sundance::intVec	(	int	a,
		int	b,
		int	c
	)			`[inline]`

Definition at line 134 of file SundanceIntVec.hpp.

IntVec Sundance::intVec	(	int	a,
		int	b
	)			`[inline]`

Definition at line 127 of file SundanceIntVec.hpp.

IntVec Sundance::intVec ( int a ) [inline]

Definition at line 120 of file SundanceIntVec.hpp.

void Sundance::invertMap	(	const Map< int, int > &	in,
		Map< int, int > &	out
	)

Definition at line 197 of file SundanceMeshIOUtils.cpp.

References Sundance::Map< Key, Value, Compare >::put().

Referenced by serialPartition().

int Sundance::iPow	(	int	base,
		int	n
	)

Compute base^N.

Definition at line 142 of file SundanceVertexSort.cpp.

Referenced by getKeyedPerm().

bool Sundance::isSquareMatrix	(	const Expr &	x,
		int &	N
	)			`[related]`

Definition at line 153 of file SundanceVectorCalculus.cpp.

References isVector(), Sundance::Expr::size(), and Sundance::Expr::totalSize().

Referenced by colonProduct().

bool Sundance::isVector	(	const Expr &	x,
		int &	N
	)			`[related]`

Definition at line 138 of file SundanceVectorCalculus.cpp.

References Sundance::Expr::size(), and Sundance::Expr::totalSize().

Referenced by isSquareMatrix(), and outerProduct().

double Sundance::L2Norm	(	const Mesh &	mesh,
		const CellFilter &	domain,
		const Expr &	f,
		const QuadratureFamily &	quad
	)			`[related]`

Definition at line 167 of file SundanceFunctional.cpp.

References evaluateIntegral().

Referenced by checkErrorNorms(), Sundance::L2NormCalculator::computeNorms(), and H1Seminorm().

Expr Sundance::List	(	const Expr &	a,
		const Expr &	b,
		const Expr &	c,
		const Expr &	d,
		const Expr &	e,
		const Expr &	f,
		const Expr &	g,
		const Expr &	h
	)			`[related]`

Definition at line 1083 of file SundanceExpr.cpp.

Expr Sundance::List	(	const Expr &	a,
		const Expr &	b,
		const Expr &	c,
		const Expr &	d,
		const Expr &	e,
		const Expr &	f,
		const Expr &	g
	)			`[related]`

Definition at line 1076 of file SundanceExpr.cpp.

Expr Sundance::List	(	const Expr &	a,
		const Expr &	b,
		const Expr &	c,
		const Expr &	d,
		const Expr &	e,
		const Expr &	f
	)			`[related]`

Definition at line 1070 of file SundanceExpr.cpp.

Expr Sundance::List	(	const Expr &	a,
		const Expr &	b,
		const Expr &	c,
		const Expr &	d,
		const Expr &	e
	)			`[related]`

Definition at line 1064 of file SundanceExpr.cpp.

Expr Sundance::List	(	const Expr &	a,
		const Expr &	b,
		const Expr &	c,
		const Expr &	d
	)			`[related]`

Definition at line 1058 of file SundanceExpr.cpp.

Expr Sundance::List	(	const Expr &	a,
		const Expr &	b,
		const Expr &	c
	)			`[related]`

Definition at line 1053 of file SundanceExpr.cpp.

Expr Sundance::List	(	const Expr &	a,
		const Expr &	b
	)			`[related]`

Definition at line 1048 of file SundanceExpr.cpp.

Expr Sundance::List ( const Expr & a ) [related]

Definition at line 1043 of file SundanceExpr.cpp.

Referenced by cross(), Coupled1DTest::exactSoln(), Sundance::EquationSet::init(), Sundance::PointData::init(), and Coupled1DTest::prob().

Set< Pair< MultiSet< int > > > Sundance::loadPartitions	(	int	x,
		int	n,
		const MultiSet< int > &	left,
		const MultiSet< int > &	right
	)

Form all pairs of multisets that can be generated from an initial pair by adding n copies of entry x.

This is used in the partitioning of multisets.

Definition at line 260 of file SundanceCombinatorialUtils.cpp.

References Sundance::Set< Key, Compare >::put(), and Sundance::MultiSet< Key >::put().

Referenced by binaryPartition().

MultipleDeriv Sundance::makeDeriv	(	const Expr &	a,
		const Expr &	b,
		const Expr &	c
	)

Definition at line 585 of file SundanceChainRuleEvaluator.cpp.

References funcDeriv(), Playa::Handle< PointerType >::ptr(), and Sundance::MultiSet< Key >::put().

MultipleDeriv Sundance::makeDeriv	(	const Expr &	a,
		const Expr &	b
	)

Definition at line 563 of file SundanceChainRuleEvaluator.cpp.

References funcDeriv(), Playa::Handle< PointerType >::ptr(), and Sundance::MultiSet< Key >::put().

MultipleDeriv Sundance::makeDeriv ( const Expr & a )

Definition at line 549 of file SundanceChainRuleEvaluator.cpp.

References funcDeriv(), Playa::Handle< PointerType >::ptr(), and Sundance::MultiSet< Key >::put().

template<class T >

FixedArray<4,T> Sundance::makeFA	(	const T &	a,
		const T &	b,
		const T &	c,
		const T &	d
	)			`[inline]`

FixedArray

Definition at line 119 of file SundanceFixedArray.hpp.

template<class T >

FixedArray<3,T> Sundance::makeFA	(	const T &	a,
		const T &	b,
		const T &	c
	)			`[inline]`

FixedArray

Definition at line 107 of file SundanceFixedArray.hpp.

template<class T >

FixedArray<2,T> Sundance::makeFA	(	const T &	a,
		const T &	b
	)			`[inline]`

FixedArray

Definition at line 97 of file SundanceFixedArray.hpp.

FunctionIdentifier Sundance::makeFuncID ( int tensorOrder ) [related]

Definition at line 108 of file SundanceFunctionIdentifier.cpp.

References scalarAlgebraSpec().

Referenced by Sundance::DiscreteFunctionStub::initTensor(), Sundance::DiscreteFunctionStub::initTensorSpectral(), Sundance::TestFunctionStub::TestFunctionStub(), and Sundance::UnknownFunctionStub::UnknownFunctionStub().

MultipleDeriv Sundance::makeMultiDeriv ( const Deriv & d )

Definition at line 361 of file SundanceMultipleDeriv.cpp.

References Sundance::MultiSet< Key >::put().

Referenced by Sundance::UnknownParameterElement::internalFindC(), Sundance::UnknownParameterElement::internalFindW(), and Xx().

Expr Sundance::makeZeros ( const Expr & v )

Definition at line 356 of file SundanceSymbPreprocessor.cpp.

References Sundance::Expr::size().

int Sundance::mapExSideToMissingVertex	(	int	dim,
		int	exFaceID
	)

Definition at line 16 of file SundanceVertexSort.cpp.

Referenced by exFacetIndexToUFCFacetIndex().

void Sundance::maximalNeighbors	(	const Mesh &	mesh,
		int	cellDim,
		int	cellLID,
		const Array< int > &	facetLID,
		std::list< int > &	rtn
	)			`[related]`

Definition at line 212 of file SundanceGeomUtils.cpp.

References Sundance::Mesh::getCofacets().

Referenced by findEnclosingCell().

Teuchos::ParameterList Sundance::mergeParamLists	(	const ParameterList &	pDef,
		const ParameterList &	pIn
	)

Definition at line 40 of file SundanceParamUtils.cpp.

Referenced by Sundance::ParameterControlledObjectWithVerbosity< EquationSet >::mergeParams().

Array< Array< MultiSet< int > > > Sundance::multisetCompositions	(	int	s,
		const MultiSet< int > &	x
	)

Return the s-term compositions of a multiset.

These are the permutations of the s-term partitions.

Definition at line 524 of file SundanceCombinatorialUtils.cpp.

References Sundance::Set< Key, Compare >::begin(), Sundance::Set< Key, Compare >::end(), multisetPartitions(), and sort().

Referenced by chainRuleTerms().

Set< MultiSet< MultiSet< int > > > Sundance::multisetPartitions ( const MultiSet< int > & m )

Return the partitions of a multiset.

The partitions are sets of subsets such that the union of the members equals the original multiset.

Definition at line 333 of file SundanceCombinatorialUtils.cpp.

References Sundance::Set< Key, Compare >::begin(), binaryPartition(), Sundance::Set< Key, Compare >::end(), Sundance::MultiSet< Key >::put(), and Sundance::Set< Key, Compare >::put().

Referenced by multisetCompositions().

Array<Array<MultiSet<int> > > Sundance::multisetSubsetNTuples	(	int	n,
		const MultiSet< int > &	x
	)

Return all N-tuples of subsets of a multisets such that the union of tuple entries is a subset of the original multiset.

For example, if the input multiset is {a,b,b}, the subsets are

Precondition:

{a}, {b}, {a,b}, {a, b, b}, {b, b}.

The 2-tuples are all pairs drawn from that collection. Of these, only

({a}, {b}) ({a}, {b, b})

satisfy the requirement that the union of tuple entries is a subset of {a,b,b}.

Set< MultipleDeriv > Sundance::multisetSubsets ( const MultipleDeriv & x )

Return all subsets of a multiset.

Definition at line 1164 of file SundanceExprWithChildren.cpp.

References bitsOfAnInteger(), Sundance::MultiSet< Key >::elements(), pow2(), Sundance::Set< Key, Compare >::put(), and Sundance::MultiSet< Key >::put().

Set< MultiSet< int > > Sundance::multisetSubsets ( const MultiSet< int > & x )

Return all subsets of a multiset.

Definition at line 485 of file SundanceCombinatorialUtils.cpp.

References bitsOfAnInteger(), Sundance::MultiSet< Key >::elements(), pow2(), Sundance::Set< Key, Compare >::put(), and Sundance::MultiSet< Key >::put().

Referenced by chainRuleTerms().

bool Sundance::nextNum	(	Array< int > &	digits,
		const Array< int > &	radix
	)

Get the next mixed-radix number.

Definition at line 49 of file SundanceCombinatorialUtils.cpp.

Referenced by Sundance::IntVec::getPartitions(), weightedOrderedPartitions(), and weightedPartitions().

Expr Sundance::NitschePoissonDirichletBC	(	int	dim,
		const CellFilter &	cells,
		const QuadratureFamily &	quad,
		const Expr &	kappa,
		const Expr &	v,
		const Expr &	u,
		const Expr &	uBC,
		const double &	gamma
	)

This function forms the expressions that apply the Dirichlet BC $u=u_{BC}$ via Nitsche's method for the Poisson operator.

Definition at line 42 of file SundanceNitscheBC.cpp.

References CellNormalExpr(), and gradient().

Expr Sundance::NitscheStokesNoSlipBC	(	const CellFilter &	cells,
		const QuadratureFamily &	quad,
		const Expr &	nu,
		const Expr &	v,
		const Expr &	q,
		const Expr &	u,
		const Expr &	p,
		const Expr &	uBC,
		const double &	gamma1,
		const double &	gamma2
	)

This function forms the expressions that apply the Dirichlet BC ${\bf u}={\bf u}_{BC}$ via Nitsche's method for the Stokes operator.

Parameters:

	cells	the surface on which the BC is to be applied
	quad	the quadrature rule to be used
	nu	the viscosity, which may be a function of velocity
	v	velocity test function
	q	pressure test function
	u	velocity unknown function
	p	pressure unknown function
	uBC	specified velocity at surface

Definition at line 59 of file SundanceNitscheBC.cpp.

References CellNormalExpr(), gradient(), and Sundance::Expr::size().

Array< Array< int > > Sundance::nonNegCompositions	(	int	n,
		int	J
	)

Return the non-negative compositions of an integer into J terms.

Definition at line 215 of file SundanceCombinatorialUtils.cpp.

References partitionInteger(), and sort().

Referenced by chainRuleDerivsOfArgs(), and restrictedCompositions().

AlgebraSpecifier Sundance::normalAlgebraSpec ( ) [related]

AlgebraSpecifier.

Definition at line 134 of file SundanceAlgebraSpecifier.cpp.

References NormalAT.

Referenced by Sundance::FunctionIdentifier::createNormal().

Deriv Sundance::normalDeriv ( const SymbolicFuncElement * symbFunc ) [related]

Definition at line 352 of file SundanceDeriv.cpp.

References NormalSDT.

Point Sundance::operator*	(	const double &	a,
		const Point &	p
	)			`[inline]`

Definition at line 266 of file SundancePoint.hpp.

ADReal Sundance::operator*	(	const double &	scalar,
		const ADReal &	a
	)			`[related]`

Definition at line 171 of file SundanceADReal.cpp.

ADReal Sundance::operator+	(	const double &	scalar,
		const ADReal &	a
	)			`[related]`

Definition at line 161 of file SundanceADReal.cpp.

ADReal Sundance::operator-	(	const double &	scalar,
		const ADReal &	a
	)			`[related]`

Definition at line 166 of file SundanceADReal.cpp.

ADReal Sundance::operator/	(	const double &	scalar,
		const ADReal &	a
	)			`[related]`

Definition at line 176 of file SundanceADReal.cpp.

References Sundance::ADReal::reciprocate().

std::ostream& Sundance::operator<<	(	std::ostream &	os,
		const CoordinateSystem &	cs
	)			`[inline]`

Definition at line 168 of file SundanceCoordinateSystem.hpp.

References Playa::Handle< PointerType >::ptr().

std::ostream& Sundance::operator<<	(	std::ostream &	os,
		const IntegrationCellSpecifier &	s
	)			`[inline]`

Definition at line 46 of file SundanceIntegrationCellSpecifier.hpp.

References AllTermsNeedCofacets, and NoTermsNeedCofacets.

std::ostream& Sundance::operator<<	(	std::ostream &	os,
		const CellJacobianBatch &	J
	)			`[inline]`

Definition at line 185 of file SundanceCellJacobianBatch.hpp.

References Sundance::CellJacobianBatch::print().

std::ostream& Sundance::operator<<	(	std::ostream &	os,
		const CFMeshPair &	c
	)			`[inline]`

Definition at line 101 of file SundanceCFMeshPair.hpp.

References Sundance::CFMeshPair::filter(), Sundance::CellFilter::getCells(), and Sundance::CFMeshPair::mesh().

std::ostream& Sundance::operator<<	(	std::ostream &	os,
		const ComputationType &	ct
	)			`[inline]`

Definition at line 49 of file SundanceComputationType.hpp.

References FunctionalAndGradient, FunctionalOnly, MatrixAndVector, Sensitivities, and VectorOnly.

template<class A , class B >

std::ostream& Sundance::operator<<	(	std::ostream &	os,
		const OrderedPair< A, B > &	p
	)			`[inline]`

Definition at line 117 of file SundanceOrderedTuple.hpp.

std::ostream& Sundance::operator<<	(	std::ostream &	os,
		const FunctorDomain &	f
	)			`[inline]`

Definition at line 159 of file SundanceFunctorDomain.hpp.

References Sundance::FunctorDomain::description().

template<class T >

std::ostream& Sundance::operator<<	(	std::ostream &	os,
		const SortedPair< T > &	p
	)			`[inline]`

Definition at line 178 of file SundanceCombinatorialUtils.hpp.

template<class T >

std::ostream& Sundance::operator<<	(	std::ostream &	os,
		const Pair< T > &	p
	)			`[inline]`

Definition at line 159 of file SundanceCombinatorialUtils.hpp.

double Sundance::orient2D	(	const double *	A,
		const double *	B,
		const double *	x
	)			`[related]`

Definition at line 122 of file SundanceGeomUtils.cpp.

Referenced by cellContainsPoint(), Sundance::AToCPointLocator::cellContainsPoint(), and volume().

Expr Sundance::outerProduct	(	const Expr &	A,
		const Expr &	B
	)			`[related]`

Definition at line 116 of file SundanceVectorCalculus.cpp.

References isVector().

Teuchos::Array< std::string > Sundance::parsePathStr ( )

Definition at line 82 of file SundancePathUtils.cpp.

References getPathStr().

Referenced by searchForFile().

Array< Array< int > > Sundance::partitionInteger ( int n )

Return partitions of an integer.

Author:: Kevin Long

Definition at line 16 of file SundanceCombinatorialUtils.cpp.

Referenced by compositions(), and nonNegCompositions().

bool Sundance::passFailTest	(	const std::string &	statusMsg,
		bool	status,
		double	error,
		double	tol
	)

Definition at line 81 of file Sundance.cpp.

References Sundance::SundanceGlobal::passFailTest().

bool Sundance::passFailTest	(	double	error,
		double	tol
	)

Definition at line 77 of file Sundance.cpp.

References Sundance::SundanceGlobal::passFailTest().

bool Sundance::passFailTest ( bool pass )

Definition at line 74 of file Sundance.cpp.

References Sundance::SundanceGlobal::passFailTest().

Referenced by main().

Expr Sundance::pow	(	const Expr &	expr,
		const double &	p
	)			`[inline]`

Definition at line 63 of file SundanceStdMathOps.hpp.

References Playa::Handle< PointerType >::ptr().

ADReal Sundance::pow	(	const ADReal &	x,
		const double &	y
	)			`[inline]`

Definition at line 144 of file SundanceADReal.hpp.

References Sundance::ADReal::gradient(), and Sundance::ADReal::value().

Referenced by Sundance::RefinementTransformation::apply(), Sundance::HNMesh3D::createLeafNumbering_sophisticated(), Sundance::HNMesh2D::createLeafNumbering_sophisticated(), Sundance::PowerFunctor::eval0(), Sundance::PowerFunctor::eval1(), Sundance::PowerFunctor::eval2(), Sundance::PowerFunctor::eval3(), Sundance::Bubble::evalOnTet(), Sundance::Bubble::evalOnTriangle(), Sundance::FeketeTriangleQuadrature::evalPKDpolynomials(), fitPower(), Sundance::DoublingStepController::run(), Sundance::TriangleQuadrature::test(), Sundance::TetQuadrature::test(), Sundance::QuadQuadrature::test(), Sundance::FeketeTriangleQuadrature::test(), Sundance::FeketeQuadQuadrature::test(), Sundance::FeketeBrickQuadrature::test(), and Sundance::BrickQuadrature::test().

int Sundance::pow2 ( int n )

Compute the n-th power of 2.

Definition at line 603 of file SundanceCombinatorialUtils.cpp.

Referenced by bitsOfAnInteger(), multisetSubsets(), and Sundance::MultipleDeriv::productRulePermutations().

void Sundance::printCell	(	const Mesh &	mesh,
		int	cellLID
	)

Definition at line 198 of file SundanceGeomUtils.cpp.

References Sundance::Mesh::getFacetArray(), Sundance::Mesh::nodePosition(), and Sundance::Mesh::spatialDim().

void Sundance::printQuad	(	std::ostream &	os,
		const Array< Point > &	pts,
		const Array< double > &	wgts
	)			`[related]`

Definition at line 436 of file SundanceQuadratureFamily.cpp.

Referenced by Sundance::ElementIntegral::getQuad().

void Sundance::pSet	(	const IntVec &	lambda,
		const IntVec &	nu,
		int	s,
		Array< Array< IntVec > > &	K,
		Array< Array< IntVec > > &	L
	)

Definition at line 155 of file SundanceCombinatorialUtils.cpp.

References Playa::abs(), Sundance::IntVec::getPartitions(), and weightedOrderedPartitions().

Point Sundance::pullback	(	const Mesh &	mesh,
		int	cellDim,
		int	cellLID,
		const double *	x
	)			`[related]`

Definition at line 165 of file SundanceGeomUtils.cpp.

References Sundance::Mesh::getFacetArray(), and Sundance::Mesh::nodePositionView().

double Sundance::readbackTester	(	const std::string &	infile,
		const MPIComm &	comm
	)

This function reads in an exodus file, discretizes a function on it, and computes some functional on it.

It then writes the field, reads it back, and computes the same functional on the new copy. The return value is the difference between the two functionals which should be zero if all is running correctly.

Definition at line 125 of file SundanceMeshIOUtils.cpp.

References Sundance::FieldWriter::addField(), Sundance::FieldWriter::addMesh(), evaluateIntegral(), Sundance::MeshSource::getMesh(), Sundance::L2Projector::project(), readNodalFields(), Playa::Out::root(), Sundance::Mesh::spatialDim(), and Sundance::FieldWriter::write().

Expr Sundance::readNodalFields	(	const MeshSource &	mesher,
		const Mesh &	mesh,
		const VectorType< double > &	vecType
	)

Read the node-based fields from a mesher.

Definition at line 12 of file SundanceMeshIOUtils.cpp.

References Sundance::DiscreteFunction::discFunc(), Sundance::MeshSource::getAttributes(), Sundance::DiscreteFunction::getVector(), Playa::loadable(), Sundance::DiscreteFunction::map(), Sundance::Mesh::numCells(), and Sundance::DiscreteFunction::setVector().

Referenced by readbackTester().

Expr Sundance::readSerialGridField	(	const std::string &	gridFile,
		double	ax,
		double	bx,
		double	ay,
		double	by,
		const VectorType< double > &	vecType,
		const MeshType &	meshType,
		Mesh &	mesh
	)

Read a 2D field stored in simple ASCII format.

nx ny # num x pts, num y pts u1_1 u2_1 ... uN_1 # data at node 1 u1_2 u2_2 ... uN_2 # data at node 2

Definition at line 58 of file SundanceMeshIOUtils.cpp.

References Sundance::DiscreteFunction::discFunc(), Sundance::MeshSource::getMesh(), Sundance::DiscreteFunction::getVector(), Playa::loadable(), Sundance::DiscreteFunction::map(), Sundance::Mesh::numCells(), and Sundance::DiscreteFunction::setVector().

Array<BasisFamily> Sundance::replicate	(	const Array< BasisFamily > &	b,
		int	n
	)			`[inline]`

Definition at line 287 of file SundanceBasisFamily.hpp.

Array<BasisFamily> Sundance::replicate	(	const BasisFamily &	b,
		int	n
	)			`[inline]`

Definition at line 278 of file SundanceBasisFamily.hpp.

Array<RCP<BasisDOFTopologyBase> > Sundance::replicate	(	const RCP< BasisDOFTopologyBase > &	model,
		int	n
	)			`[related]`

Definition at line 142 of file SundanceMapStructure.cpp.

Referenced by Sundance::DiscreteSpace::DiscreteSpace(), and Sundance::MapStructure::MapStructure().

void Sundance::reportFailure ( const MPIComm & comm )

Call this function upon catching an exception at a point before a collective operation.

This function will do an AllReduce in conjunction with calls to either this function or its partner, checkForFailures(), on the other processors. This procedure has the effect of communicating to the other processors that an exception has been detected on this one.

Definition at line 10 of file SundanceCollectiveExceptionCheck.cpp.

References Playa::MPIComm::allReduce(), Playa::MPIDataType::intType(), and Playa::MPIOp::sumOp().

Referenced by Sundance::BasicSimplicialMesh::assignIntermediateCellGIDs(), Sundance::PartitionedLineMesher::fillMesh(), Sundance::BasicSimplicialMesh::resolveEdgeOwnership(), and Sundance::BasicSimplicialMesh::synchronizeNeighborLists().

Array< CFMeshPair > Sundance::resolvePair	(	const CFMeshPair &	a,
		const CFMeshPair &	b
	)

Definition at line 124 of file SundanceCFMeshPair.cpp.

References Sundance::CFMeshPair::intersection(), and Sundance::CFMeshPair::setMinus().

Referenced by resolveSets().

Array< CFMeshPair > Sundance::resolveSets ( const Array< CFMeshPair > & s )

Definition at line 137 of file SundanceCFMeshPair.cpp.

References Sundance::CFMeshPair::isEmpty(), and resolvePair().

Referenced by findDisjointFilters().

void Sundance::restrictedCompositions	(	int	n,
		int	len,
		Array< Array< int > > &	rComps
	)

Get the compositions of length M of an integer n.

Definition at line 210 of file SundanceCombinatorialUtils.cpp.

References nonNegCompositions().

Referenced by Sundance::IntVec::getPartitions().

AlgebraSpecifier Sundance::scalarAlgebraSpec ( ) [related]

AlgebraSpecifier.

Definition at line 128 of file SundanceAlgebraSpecifier.cpp.

References ScalarAT.

Referenced by makeFuncID().

std::string Sundance::searchForFile ( const std::string & name )

Definition at line 44 of file SundancePathUtils.cpp.

References parsePathStr().

Referenced by Sundance::ExodusMeshReader::fillMesh(), and Sundance::MeshReaderBase::openFile().

void Sundance::serialPartition	(	const RCP< SerialPartitionerBase > &	part,
		int	numProc,
		const MeshSource &	mesher,
		const std::string &	outfile
	)

Partition a mesh and write the parts to exodus files.

Definition at line 207 of file SundanceMeshIOUtils.cpp.

References Sundance::FieldWriter::addField(), Sundance::FieldWriter::addMesh(), Sundance::Set< Key, Compare >::begin(), Sundance::MeshSource::comm(), Sundance::Set< Key, Compare >::end(), Sundance::Map< Key, Value, Compare >::get(), Sundance::MeshSource::getAttributes(), Sundance::MeshSource::getMesh(), Playa::MPIComm::getNProc(), Sundance::FieldWriter::impersonateParallelProc(), invertMap(), Playa::Out::os(), Sundance::Set< Key, Compare >::size(), Sundance::Mesh::spatialDim(), toString(), Teuchos::toString(), and Sundance::FieldWriter::write().

void Sundance::setDiscreteFunctionVector	(	Expr	u,
		const Vector< double > &	v
	)			`[related]`

Definition at line 252 of file SundanceDiscreteFunction.cpp.

References Playa::Vector< Scalar >::getBlock(), Sundance::DiscreteFunctionData::getData(), Playa::Handle< PointerType >::ptr(), Sundance::DiscreteFunctionData::setVector(), Sundance::DiscreteFunction::setVector(), and Sundance::Expr::size().

Referenced by addVecToDiscreteFunction(), Sundance::PDEConstrainedObjBase::eval(), Sundance::DoublingStepController::run(), Sundance::NonlinearPDEConstrainedObj::solveState(), Sundance::LinearPDEConstrainedObj::solveState(), Sundance::NonlinearPDEConstrainedObj::solveStateAndAdjoint(), Sundance::LinearPDEConstrainedObj::solveStateAndAdjoint(), updateDiscreteFunction(), Sundance::NLOp::updateDiscreteFunctionValue(), and Sundance::LinearSolveDriver::writeIntoSolutionExpr().

void Sundance::setOption	(	const std::string &	optionTrueName,
		const std::string &	optionFalseName,
		bool &	value,
		const std::string &	helpMsg
	)

Definition at line 122 of file Sundance.cpp.

References Sundance::SundanceGlobal::setOption().

void Sundance::setOption	(	const std::string &	optionName,
		std::string &	value,
		const std::string &	helpMsg
	)

Definition at line 115 of file Sundance.cpp.

References Sundance::SundanceGlobal::setOption().

void Sundance::setOption	(	const std::string &	optionName,
		double &	value,
		const std::string &	helpMsg
	)

Definition at line 108 of file Sundance.cpp.

References Sundance::SundanceGlobal::setOption().

void Sundance::setOption	(	const std::string &	optionName,
		int &	value,
		const std::string &	helpMsg
	)

Definition at line 101 of file Sundance.cpp.

References Sundance::SundanceGlobal::setOption().

StdLog Sundance::SUNDANCE_AD_FUNCTOR	(	sqrt	,
		StdSqrt
	)

Sundance::SUNDANCE_AD_FUNCTOR	(	exp	,
		StdExp
	)

Sundance::SUNDANCE_UNARY_FUNCTOR	(	reciprocal	,
		StdReciprocal	,
		"reciprocal function"	,
		NonzeroDomain()	,
		1.0/	x[i],
		-f *	f[i][i],
		-2.0 *df/	x[i][i]
	)

Array<Array<BasisFamily> > Sundance::testBasisArray ( const RCP< FunctionSupportResolver > & fsr ) [related]

Definition at line 930 of file SundanceDOFMapBuilder.cpp.

References Sundance::BasisFamily::getBasis().

int& Sundance::testStatus ( )

Definition at line 85 of file Sundance.cpp.

References Sundance::SundanceGlobal::testStatus().

Referenced by main().

template<typename A , typename B >

bool Sundance::typeLessThan	(	const A *	a,
		const B *	b
	)			`[inline]`

Definition at line 41 of file SundanceTypeUtils.hpp.

Referenced by Sundance::RaviartThomas::lessThan(), and Sundance::BasisFamilyBase::lessThan().

int Sundance::ufcFacetIndexToExFacetIndex	(	int	meshDim,
		int	ufcFacetIndex
	)

Definition at line 173 of file SundanceVertexSort.cpp.

Referenced by Sundance::ExodusWriter::writeMesh().

Array< int > Sundance::ufcSide	(	int	f,
		const Array< int > &	verts
	)

Definition at line 85 of file SundanceVertexSort.cpp.

Array< int > Sundance::ufcSideVertPos	(	int	dim,
		int	f
	)

Definition at line 59 of file SundanceVertexSort.cpp.

absolute Sundance::UnboundedDomain ( )

Type Constraints

Referenced by Sundance::PowerFunctor::powerDomain().

Expr Sundance::unfoldPeriodicDiscreteFunction	(	const Expr &	f,
		const string &	name
	)

"Unfold" a discrete function defined on a periodic mesh, producing a function usable on a non-periodic mesh of the same interval

Definition at line 85 of file SundanceUnfoldPeriodicDF.cpp.

References Sundance::DiscreteSpace::createVector(), Sundance::DiscreteFunction::discFunc(), Sundance::DiscreteFunction::discreteSpace(), Sundance::DiscreteFunction::ghostView(), Playa::loadable(), Sundance::DiscreteSpace::map(), Sundance::DiscreteSpace::mesh(), Sundance::Mesh::numCells(), unfoldPeriodicDiscreteSpace(), and Sundance::DiscreteFunction::updateGhosts().

DiscreteSpace Sundance::unfoldPeriodicDiscreteSpace ( const DiscreteSpace & space )

"Unfold" a periodic discrete space, producing a non-periodic discretization of the same interval

Definition at line 76 of file SundanceUnfoldPeriodicDF.cpp.

References Sundance::DiscreteSpace::basis(), Sundance::DiscreteSpace::mesh(), unfoldPeriodicMesh(), and Sundance::DiscreteSpace::vecType().

Referenced by unfoldPeriodicDiscreteFunction().

Mesh Sundance::unfoldPeriodicMesh ( const Mesh & mesh )

"Unfold" a periodic mesh to produce a 1D mesh without duplicated vertices

Definition at line 55 of file SundanceUnfoldPeriodicDF.cpp.

References Sundance::MeshSource::getMesh(), Sundance::Mesh::nodePosition(), Sundance::Mesh::numCells(), Playa::Handle< PointerType >::ptr(), and Playa::MPIComm::self().

Referenced by unfoldPeriodicDiscreteSpace().

Array<Array<BasisFamily> > Sundance::unkBasisArray ( const RCP< FunctionSupportResolver > & fsr ) [related]

Definition at line 944 of file SundanceDOFMapBuilder.cpp.

References Sundance::BasisFamily::getBasis().

void Sundance::updateDiscreteFunction	(	const Expr &	newVals,
		Expr	old
	)			`[related]`

Definition at line 198 of file SundanceDiscreteFunction.cpp.

References Playa::Vector< Scalar >::acceptCopyOf(), getDiscreteFunctionVector(), and setDiscreteFunctionVector().

Referenced by Sundance::DoublingStepController::run(), and Sundance::TransientStepProblem::step().

Array<std::pair<int, int> > Sundance::vectorDimStructure ( const BasisFamily & basis ) [related]

Definition at line 224 of file SundanceBasisFamily.cpp.

References vectorDimStructure().

Array<std::pair<int, int> > Sundance::vectorDimStructure ( const Array< BasisFamily > & basis ) [related]

Definition at line 213 of file SundanceBasisFamily.cpp.

Referenced by Sundance::DiscreteSpace::dimStructure(), and vectorDimStructure().

void Sundance::vertexSort	(	Array< int > &	verts,
		int *	key
	)

Definition at line 107 of file SundanceVertexSort.cpp.

References insertionSort().

Referenced by Sundance::ExodusMeshReader::fillMesh().

double Sundance::volume	(	const Mesh &	mesh,
		int	cellDim,
		int	cellLID
	)

Definition at line 97 of file SundanceGeomUtils.cpp.

References Sundance::Mesh::getFacetArray(), Sundance::Mesh::nodePosition(), Sundance::Mesh::nodePositionView(), and orient2D().

Referenced by Sundance::AToCDensitySampler::init().

void Sundance::weightedOrderedPartitions	(	const IntVec &	v,
		const Array< int > &	w,
		Array< Array< IntVec > > &	parts
	)

Definition at line 110 of file SundanceCombinatorialUtils.cpp.

References Playa::abs(), nextNum(), Sundance::IntVec::size(), and weightedPartitions().

Referenced by pSet().

void Sundance::weightedPartitions	(	int	n,
		const Array< int > &	w,
		Array< Array< int > > &	parts
	)

Get the weighted partitions of an integer.

Definition at line 70 of file SundanceCombinatorialUtils.cpp.

References nextNum().

Referenced by weightedOrderedPartitions().

void Sundance::writeTable	(	std::ostream &	os,
		const Tabs &	tab,
		const Array< int > &	a,
		int	cols
	)

Definition at line 64 of file SundanceOut.cpp.

void Sundance::writeTable	(	std::ostream &	os,
		const Tabs &	tab,
		const Array< double > &	a,
		int	cols
	)

Definition at line 43 of file SundanceOut.cpp.

Referenced by Sundance::IntegralGroup::evaluate(), Sundance::FeketeQuadrature::getAdaptedQuadWeights(), Sundance::QuadratureIntegral::transformOneForm(), Sundance::MaximalQuadratureIntegral::transformOneForm(), Sundance::CurveQuadratureIntegral::transformOneForm(), Sundance::QuadratureIntegral::transformZeroForm(), Sundance::MaximalQuadratureIntegral::transformZeroForm(), and Sundance::CurveQuadratureIntegral::transformZeroForm().

Set< MultipleDeriv > Sundance::Xx ( const MultiIndex & x )

Definition at line 290 of file SundanceMultipleDeriv.cpp.

References coordDeriv(), Sundance::MultiIndex::firstOrderDirection(), makeMultiDeriv(), Sundance::MultiIndex::order(), and Sundance::Set< Key, Compare >::put().

Referenced by Sundance::DiffOp::internalDetermineR(), Sundance::DiffOp::internalFindV(), and Sundance::DiffOp::internalFindW().

Variable Documentation

Sundance::StdFabs

Definition at line 104 of file SundanceStdMathFunctors.hpp.

const double & Teuchos::Parameter::value

Definition at line 104 of file SundanceStdMathFunctors.hpp.

Referenced by Sundance::Lagrange::evalOnBrick(), Sundance::Lagrange::evalOnLine(), Sundance::EdgeLocalizedBasis::evalOnLine(), Sundance::Bubble::evalOnLine(), Sundance::Bernstein::evalOnLine(), Sundance::Legendre::evalOnQuad(), Sundance::Lagrange::evalOnquad(), Sundance::Lagrange::evalOnTet(), Sundance::Bubble::evalOnTet(), Sundance::Bernstein::evalOnTet(), Sundance::Lagrange::evalOnTriangle(), Sundance::EdgeLocalizedBasis::evalOnTriangle(), Sundance::CubicHermite::evalOnTriangle(), Sundance::Bubble::evalOnTriangle(), Sundance::Bernstein::evalOnTriangle(), Sundance::FunctionalEvaluator::evaluate(), and NOX::NOXPlaya::Vector::norm().

Sundance Namespace Reference

Namespaces

Classes

Typedefs

Enumerations

Functions

Variables

Typedef Documentation

Enumeration Type Documentation

Function Documentation

Variable Documentation